PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN19230.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 166aa    MW: 18974.5 Da    PI: 10.7416
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN19230.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.23.1e-052345123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                ++C++C+++F ++  L  H++ H
  KHN19230.1 23 FRCHYCKRVFGNSQALGGHQNAH 45
                89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.608.8E-41749IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.77E-61950No hitNo description
PfamPF139122.1E-52347IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.2812350IPR007087Zinc finger, C2H2
PROSITE patternPS0002802545IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    Send to blast
MSDETWPPKV FGFPLTEQED RKFRCHYCKR VFGNSQALGG HQNAHKKERQ RARRFQIHTH  60
RRAIAAAASI SSHAIITSVP SIYLRGHPPT PTSLLPIFDP HRQPNNTKHF PSRPTFIPSS  120
SNYHLTNYTQ CFPFRLYASP THVLQSSTPK VPHFSAQGEV DVHLKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN19230.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0932080.0BT093208.1 Soybean clone JCVI-FLGm-17A17 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028226290.11e-121zinc finger protein 6-like
TrEMBLA0A0B2QD881e-120A0A0B2QD88_GLYSO; Zinc finger protein 6
STRINGGLYMA03G37610.11e-119(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF39032449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06650.12e-12C2H2 family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]