PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN19374.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family HD-ZIP
Protein Properties Length: 323aa    MW: 36589.2 Da    PI: 4.4454
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN19374.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.64.4e-1888141356
                 --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                 k+++++ eq++ Le+ F +++++  e++  LAk+lgL+ rqV +WFqNrRa++k
  KHN19374.1  88 KKRRLSVEQVKFLEKSFDEENKLEPERKIWLAKELGLQPRQVAIWFQNRRARWK 141
                 56689************************************************9 PP
2HD-ZIP_I/II127.75e-4187179193
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                  ekkrrls eqvk+LE+sF+ee+kLeperK  la+eLglqprqva+WFqnrRAR+ktkq+Ekdy++L+++y+ lk++ ++L +e+++L++e+++
   KHN19374.1  87 EKKRRLSVEQVKFLEKSFDEENKLEPERKIWLAKELGLQPRQVAIWFQNRRARWKTKQMEKDYDSLQASYNDLKANYDNLLREKDKLKAEVAR 179
                  69**************************************************************************************99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.27E-1975145IPR009057Homeodomain-like
PROSITE profilePS5007116.98983143IPR001356Homeobox domain
SMARTSM003895.6E-1986147IPR001356Homeobox domain
CDDcd000864.69E-1888144No hitNo description
PfamPF000462.6E-1588141IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.607.1E-1990151IPR009057Homeodomain-like
PRINTSPR000319.0E-5114123IPR000047Helix-turn-helix motif
PROSITE patternPS000270118141IPR017970Homeobox, conserved site
PRINTSPR000319.0E-5123139IPR000047Helix-turn-helix motif
PfamPF021833.5E-16143184IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MAAGTVFCAA ASNLTTTTFL HNQTPPSTSS QPPLDSLFLS ASSPFLGSRS IVSFGDVQGG  60
KGCNDSFFRP YDENGDEDMD EYFHQPEKKR RLSVEQVKFL EKSFDEENKL EPERKIWLAK  120
ELGLQPRQVA IWFQNRRARW KTKQMEKDYD SLQASYNDLK ANYDNLLREK DKLKAEVARL  180
TEKVLGREKN ESHLEQAETN GLQEPLHKSL VDSASEGEGS KVTFEACKQE DISSAKSDIF  240
DSSESPQYTD GVHSALLETG DSSYVFEPDR SDVSQDEEDN LSKTLLPHYI FPKLEDVDYS  300
DPPHGSCNFG IPEEDQAIWS WPY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1135143RRARWKTKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN19374.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY8236710.0AY823671.1 Glycine max HDZip I protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001237881.20.0HDZip I protein
RefseqXP_028237206.10.0homeobox-leucine zipper protein HAT5-like
TrEMBLA0A445KBU20.0A0A445KBU2_GLYSO; Homeobox-leucine zipper protein HAT5
TrEMBLI1KCP40.0I1KCP4_SOYBN; Uncharacterized protein
STRINGGLYMA06G20230.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15003499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.11e-45homeobox 1
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]