PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN19445.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

C2H2

Protein Properties

Length: 352aa MW: 39832.7 Da PI: 7.7289

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN19445.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	21.1	8.2e-07	191	210	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp C+k+F+r nL+ H+ KHN19445.1 191 FPCPVCSKTFNRYNNLQMHM 210 89*****************9 PP
2	zf-C2H2	15.4	5.3e-05	275	297	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y C +Cgk F k + ++H +++ KHN19445.1 275 YMCRKCGKAFAVKGDWRTHEKNC 297 89*****************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	8.51E-6	187	213	No hit	No description
Gene3D	G3DSA:3.30.160.60	2.0E-6	191	210	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	10.616	191	218	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.034	191	213	IPR015880	Zinc finger, C2H2-like
Pfam	PF13912	2.9E-5	191	210	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	193	213	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	1.02E-6	259	295	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.5E-6	271	295	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	8.974	275	295	IPR007087	Zinc finger, C2H2
SMART	SM00355	40	275	295	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 352 aa Download sequence Send to blast
MTDPQSNLFH EWFNFMLLHP HYSSSQSNYP FANNYSNNNR FGIQLQQGAA SSSSSSFYAA 60 PPSSPPLREA LPLINKISLK SSEQHQQNEP SSNVVEEKEE DKNKVDNNKH HESGEDGDEE 120 TVTVALHIGL PRMDTSSSDL GPSRVVSTTC MEISEKEEVN MISKHPLDNR LNKGQYWIPT 180 PSQILIGPTQ FPCPVCSKTF NRYNNLQMHM WGHGSQYRKG PDSLKGTQPT AMLRLPCFCC 240 APGCKHNIDH PRARPLKDFR TLQTHYKRKH GIKPYMCRKC GKAFAVKGDW RTHEKNCGKI 300 WYCLCGSDFK HKRSLKDHIK AFGFGHGSFG IDCLQEEDEA ASDIEHDGES SM

Sequence ? help Back to Top

Protein Sequence Length: 352 aa Download sequence Send to blast

MTDPQSNLFH EWFNFMLLHP HYSSSQSNYP FANNYSNNNR FGIQLQQGAA SSSSSSFYAA  60
PPSSPPLREA LPLINKISLK SSEQHQQNEP SSNVVEEKEE DKNKVDNNKH HESGEDGDEE  120
TVTVALHIGL PRMDTSSSDL GPSRVVSTTC MEISEKEEVN MISKHPLDNR LNKGQYWIPT  180
PSQILIGPTQ FPCPVCSKTF NRYNNLQMHM WGHGSQYRKG PDSLKGTQPT AMLRLPCFCC  240
APGCKHNIDH PRARPLKDFR TLQTHYKRKH GIKPYMCRKC GKAFAVKGDW RTHEKNCGKI  300
WYCLCGSDFK HKRSLKDHIK AFGFGHGSFG IDCLQEEDEA ASDIEHDGES SM

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269\|PubMed:17600712, ECO:0000269\|PubMed:23515580, ECO:0000269\|PubMed:25039392}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN19445.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015039	0.0	AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003539640.1	0.0	zinc finger protein WIP2
Refseq	XP_014620599.1	0.0	zinc finger protein WIP2
Refseq	XP_028193838.1	0.0	zinc finger protein WIP2-like
Refseq	XP_028193839.1	0.0	zinc finger protein WIP2-like
Swissprot	Q9SVY1	1e-121	ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBL	A0A0B2QDT4	0.0	A0A0B2QDT4_GLYSO; Protein TRANSPARENT TESTA 1
TrEMBL	K7LWM6	0.0	K7LWM6_SOYBN; Uncharacterized protein
STRING	GLYMA12G36660.2	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF170	34	289

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57670.1	1e-121	C2H2 family protein

Publications ? help Back to Top
Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933] Crawford BC, et al. Plant development. Genetic control of distal stem cell fate within root and embryonic meristems. Science, 2015. 347(6222): p. 655-9 [PMID:25612610] Boex-Fontvieille E, et al. An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence. Front Plant Sci, 2016. 7: p. 1246 [PMID:27625656]