PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN19451.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C3H
Protein Properties Length: 517aa    MW: 56497.5 Da    PI: 8.0275
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN19451.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.81.6e-0794114526
                 --SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                 +C++f++ G C++Gd C +aHg
  KHN19451.1  94 PCPDFRK-GACRRGDMCEYAHG 114
                 8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003564.0E-689115IPR000571Zinc finger, CCCH-type
PfamPF006424.3E-594114IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.2E-494116IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.58294116IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.0E-4122152IPR000571Zinc finger, CCCH-type
SMARTSM0035635124147IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 517 aa     Download sequence    Send to blast
MPYTPSSSPP SPVVAKFTDA AVCSLSEKKE YPIDPSLPDI KNSIYATDEF RMFSFKVRPC  60
SRAYSHDWTE CPFVHPGENA RRRDPRKFHY SCVPCPDFRK GACRRGDMCE YAHGVFECWL  120
HPAQYRTRLC KDGTSCNRRV CFFAHTAEEL RPLYVSTGSA VPSPRSSASA PNVMDMAAAM  180
SLLPGSPSSV SSMSPSHFGQ PMSPSANGMS LSSAWAQPNV PALHLPGSNL QSSRLRSSLS  240
ARDMPPDDLN MMSDLDGQQQ HPLNDLSCYL QPRPGAGSVS RSGRSKILTP SNLEDLFSAE  300
ISSSPRYSDP AAGSVFSPTH KSAVLNQFQQ LQSMLSPINT NLLSPKNVEH PLLQASFGVS  360
PSGRMSPRSV EPISPMSSRI SAFAQREKQQ QQQLRSLSSR DLGANSPASL VGSPANPWSK  420
WGSPNGKADW SVNGDTLGRQ MRRSSSFELK NNGEEPDLSW VQSLVKESPP EMIKEKFASP  480
MPTASADGPN SNSQIESIDH SVLGAWLEQM QLDQLVV
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN19451.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0311560.0KT031156.1 Glycine max clone HN_CCL_174 C3H-type 1 Zn transcription factor (Glyma13g27280.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028194867.10.0zinc finger CCCH domain-containing protein 30-like
SwissprotQ10EL10.0C3H24_ORYSJ; Zinc finger CCCH domain-containing protein 24
TrEMBLA0A445HUI50.0A0A445HUI5_GLYSO; Zinc finger CCCH domain-containing protein 30 isoform A
STRINGGLYMA12G36600.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17323395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.11e-171CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]