PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN19577.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NAC
Protein Properties Length: 598aa    MW: 67039 Da    PI: 6.0805
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN19577.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM168.62.1e-52221481127
         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkg 97 
                 lp GfrF+Ptdeelv++yL++k++g+  ++  vi+e+d++k+ePwd+p  + v++++ ew+fF+++d+ky++g+r nrat++gyWkatgkd++++s ++
  KHN19577.1  22 LPLGFRFRPTDEELVNYYLRQKINGNGRQV-WVIREIDVCKWEPWDMPglSVVQTKDPEWFFFCPQDRKYPNGHRLNRATNNGYWKATGKDRRIKS-GK 118
                 699************************999.89***************6447788888**************************************.99 PP

         NAM  98 elvglkktLvfykgrapkgektdWvmheyr 127
                  l+g+kktLvfy+grapkg++t+Wvmheyr
  KHN19577.1 119 DLIGMKKTLVFYTGRAPKGNRTNWVMHEYR 148
                 9****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.75E-6017172IPR003441NAC domain
PROSITE profilePS5100556.222172IPR003441NAC domain
PfamPF023654.4E-2823148IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 598 aa     Download sequence    Send to blast
MGSVDCYPSR TDDAAVVSLD SLPLGFRFRP TDEELVNYYL RQKINGNGRQ VWVIREIDVC  60
KWEPWDMPGL SVVQTKDPEW FFFCPQDRKY PNGHRLNRAT NNGYWKATGK DRRIKSGKDL  120
IGMKKTLVFY TGRAPKGNRT NWVMHEYRPT LKELDGTNPG QNPYVLCRLF KKHDESLEVS  180
HCDEAEQTAS TPVAYSTEEI QSDLAVVAGS PSQVTEDDKH QAMIPAHSEE AISNVVTPVV  240
CRSDRYDACH APNQIVLPTA EEFQPLNYYD PRNELLDDKL FSPVIAHIQP EFHYQANIES  300
DGWYGLQYGT NETNMSDFLN SVVNWDQVSF EDLNCQQQSY PLFNVKDSVL SSDLDSELAI  360
MTCMHAGSAE GPNNGRKPLV ITSEFRSTTG IPVDCGGDEQ KSNVGLFQNN SQRAFTDVNI  420
GQVYNVVDDY EQRGIYSAVA SGNTGIIRRH REVQNEQLSS NSTQGTAQRR IRLSMATHGS  480
NKMVKSGSCA QEELNLKSVI AMEEKASESH ISDESSTLTN DGNELPKTSK SSGKRKISRQ  540
ATKAGSTLGL KDFLLLRRVP YISKASSNRA KCSSVFVVSA FVMVTLVVFT DIWGYLKF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A4e-452117514171Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN19577.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0984320.0BT098432.1 Soybean clone JCVI-FLGm-23K19 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028236228.10.0NAC domain-containing protein 91-like
TrEMBLA0A0B2QIH60.0A0A0B2QIH6_GLYSO; NAC domain-containing protein 78
STRINGGLYMA06G14290.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF55513353
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.35e-96NAC transcription factor-like 9
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]