PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN19633.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family HD-ZIP
Protein Properties Length: 283aa    MW: 32806 Da    PI: 4.6151
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN19633.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox54.71.7e-174293556
                SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox  5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                +++t+eq++ L++ Fe ++++  e++ +LAk+lg++ rqV +WFqNrRa+ k
  KHN19633.1 42 RRLTSEQVQFLQSNFEVENKLEPERKVQLAKELGMQPRQVAIWFQNRRARFK 93
                479***********************************************98 PP
2HD-ZIP_I/II121.93.2e-3940131293
  HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                  k rrl++eqv++L ++Fe e+kLeperKv+la+eLg+qprqva+WFqnrRAR+ktkqlE+dy +Lk++y  lk++ ++L +e+++L+ee+++
   KHN19633.1  40 KTRRLTSEQVQFLQSNFEVENKLEPERKVQLAKELGMQPRQVAIWFQNRRARFKTKQLETDYGMLKASYHVLKRDYDNLLQENDKLKEEVNS 131
                  789************************************************************************************99975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007116.053595IPR001356Homeobox domain
SMARTSM003894.0E-163899IPR001356Homeobox domain
CDDcd000862.50E-153896No hitNo description
SuperFamilySSF466891.67E-1839106IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.9E-1942102IPR009057Homeodomain-like
PfamPF000465.4E-154293IPR001356Homeobox domain
PRINTSPR000318.4E-66675IPR000047Helix-turn-helix motif
PROSITE patternPS0002707093IPR017970Homeobox, conserved site
PRINTSPR000318.4E-67591IPR000047Helix-turn-helix motif
PfamPF021833.5E-1695134IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
GSKSMANVVN VTHRPFFQGP EKEENGNDAD FEVCLHQPGK TRRLTSEQVQ FLQSNFEVEN  60
KLEPERKVQL AKELGMQPRQ VAIWFQNRRA RFKTKQLETD YGMLKASYHV LKRDYDNLLQ  120
ENDKLKEEVN SLNRLIPREQ EEQNSDDTSC DTVNSRHKEH KEHKDLIINT GSENGSEVPL  180
PVKVINKHED ANSAKSDVLD SESRHFTDGN QSSYMEPADS SHALEPDHSD FSQDEEDILS  240
QNILTMPFLP KVEDVCYEYD EPNENSCSFR FPLEDQAFCF WSY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18795RRARFKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator involved in leaf development. Binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:8535134}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN19633.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006602335.10.0homeobox-leucine zipper protein HOX5 isoform X2
SwissprotQ022832e-42HAT5_ARATH; Homeobox-leucine zipper protein HAT5
TrEMBLA0A0B2QIA50.0A0A0B2QIA5_GLYSO; Homeobox-leucine zipper protein HAT5 (Fragment)
STRINGGLYMA18G16390.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15003499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.18e-45homeobox 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]
  3. Ribone PA,Capella M,Arce AL,Chan RL
    A uORF Represses the Transcription Factor AtHB1 in Aerial Tissues to Avoid a Deleterious Phenotype.
    Plant Physiol., 2017. 175(3): p. 1238-1253
    [PMID:28956754]