PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN19686.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NAC
Protein Properties Length: 389aa    MW: 43669.7 Da    PI: 6.1657
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN19686.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM99.16.6e-31561972128
         NAM   2 ppGfrFhPtdeelvveyLkkkvegkk......leleevikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra........tksgy 82 
                 p+G++F+P+d el+ e+L++k+   +      +  +++i++++    i++++P++Lp  +k++ ++++fF+k++++yatg+rk+r+         ++ +
  KHN19686.1  56 PVGVKFDPSDVELL-EHLAAKCCIGNrephmfI--HQFIPTLEgeqgICYTHPQNLP-GAKTDGSSVHFFHKTANAYATGRRKRRKihhqdgltEEHVR 150
                 89************.888888665554666431..333444322334**********.55678899*******************86777777444889 PP

         NAM  83 WkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                 W++tg++k+v++ +g ++g kk++v+y  +++  k+ kt+Wvmh+y+l
  KHN19686.1 151 WHKTGRTKAVTE-DGVHKGFKKIMVLYirSKKGTKPYKTNWVMHQYHL 197
                 ***********9.999***********7645666777*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.05E-3739215IPR003441NAC domain
PROSITE profilePS5100529.13955215IPR003441NAC domain
PfamPF023654.6E-1356197IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MARSWLIDIR GFAKKVKDTT LSTDDQMKDC GTYSECPKCH YHIDNSNVSH EWPGFPVGVK  60
FDPSDVELLE HLAAKCCIGN REPHMFIHQF IPTLEGEQGI CYTHPQNLPG AKTDGSSVHF  120
FHKTANAYAT GRRKRRKIHH QDGLTEEHVR WHKTGRTKAV TEDGVHKGFK KIMVLYIRSK  180
KGTKPYKTNW VMHQYHLGSE VEKDGEYVVS KIFYQQHKQN EKNEENTMVE DSNVAAQAGP  240
RTPKPNPPTR PCTAKCDDNF DENELLPFIQ DARPIPGESH APPSNVQDED PAWLAGESQA  300
DCDFDGLEDI LLCKEMLQSS ALLNHSGLTS TFNGDAKANK LVAPGNNNDY GSHGVSVLDT  360
LELDTPPDFD LSNLQFGSQD STLQWIDTP
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN19686.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0156431e-168AP015643.1 Vigna angularis var. angularis DNA, scaffold: Scaffold_0599, complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028217838.10.0SUPPRESSOR OF GAMMA RESPONSE 1-like isoform X1
TrEMBLA0A0B2QDN10.0A0A0B2QDN1_GLYSO; NAC domain-containing protein 8
STRINGGLYMA19G00640.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF75723047
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01600.15e-97NAC domain containing protein 44
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]