PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN20040.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

SRS

Protein Properties

Length: 191aa MW: 21528.7 Da PI: 8.2266

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN20040.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	90.2	4.5e-28	13	69	3	59
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaa 59 sg+++CqdCGnqakk+C++ RCRtCCk++gf+C+th+kstW p+++rr + q + KHN20040.1 13 SGGSKCQDCGNQAKKECSYLRCRTCCKNKGFHCQTHIKSTWTPVDHRRRHFQGQGGD 69 6889*****************************************999986655544 PP
2	DUF702	72.9	9.9e-23	75	136	93	154
DUF702 93 saeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 ++++ + + ++P+ +s+a frc++v+s+dd+ +e+aYqt+v+igGhvf+G+LydqG+e KHN20040.1 75 NHNQINPYSELRFPAATNSMATFRCIHVRSMDDAVNEIAYQTSVNIGGHVFSGLLYDQGPEY 136 445555566677***********************************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	1.6E-22	15	64	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	1.7E-24	17	58	IPR006510	Zinc finger, lateral root primordium type 1
Pfam	PF05142	6.9E-19	80	135	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01624	7.0E-20	86	134	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 191 aa Download sequence Send to blast
MQRVRQGEEE VASGGSKCQD CGNQAKKECS YLRCRTCCKN KGFHCQTHIK STWTPVDHRR 60 RHFQGQGGDH HIPQNHNQIN PYSELRFPAA TNSMATFRCI HVRSMDDAVN EIAYQTSVNI 120 GGHVFSGLLY DQGPEYQRGH QGESSTGFVD KQQNSNNNNL DSSGASATHQ EYLFPLSSFR 180 PGMPYLTYPR S

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269\|PubMed:16740146}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN20040.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015035	4e-44	AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028234232.1	1e-144	protein SHI RELATED SEQUENCE 3-like
Swissprot	Q9SJT8	2e-43	SRS3_ARATH; Protein SHI RELATED SEQUENCE 3
TrEMBL	A0A445K2Z8	1e-143	A0A445K2Z8_GLYSO; Protein SHI RELATED SEQUENCE 3
STRING	GLYMA06G01160.2	1e-101	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9969	25	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G21400.1	2e-43	SHI-related sequence3

Publications ? help Back to Top
Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933]