PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN20602.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family FAR1
Protein Properties Length: 196aa    MW: 22763 Da    PI: 4.0421
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN20602.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR132.62.7e-10119182261
        FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.....tekerrtraetrtg 61 
                 fY+ YAk +GFsvrks+  ++ + +e+ ++tfvC + g+r+++ ++     +++++++ ++   +
  KHN20602.1 119 FYCWYAKITGFSVRKSHILRN-TCRETLQQTFVCLCAGYRRDKGSTsnirkRQEKKKKASVVVKQ 182
                 9****************9999.66779***************99994444323333333333334 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.7E-8119181IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MESSHNFCSS VNGDGDNDVT EVYENDDDDE AYEEDVDHNR VGDSDDQDDV GLEDEEEVDS  60
EVDNDNYRDY DDFWIPGFFK EECITIDTIV DIRQLDMEKI TVEDVSKLDF CDLEIAYLFY  120
CWYAKITGFS VRKSHILRNT CRETLQQTFV CLCAGYRRDK GSTSNIRKRQ EKKKKASVVV  180
KQCFVFMCIF VGNDGM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1167174KRQEKKKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN20602.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006603498.14e-53protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A0B2QLH71e-140A0A0B2QLH7_GLYSO; Uncharacterized protein
TrEMBLA0A445H5871e-136A0A445H587_GLYSO; Protein FAR-RED IMPAIRED RESPONSE 1
STRINGGLYMA12G18636.19e-72(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3265734
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]