PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN20647.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family SRS
Protein Properties Length: 220aa    MW: 22810.1 Da    PI: 4.9658
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN20647.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF70284.42.8e-269415496154
      DUF702  96 skkele.tsslPeevsseavfrcvrvssvdd.geeelaYqtavsigGhvfkGiLydqGlee 154
                 s++++  ++slP++v+++avf+cvrv+svdd ge+e+aYq++v+igGhvfkG+LydqG+e+
  KHN20647.1  94 SHHHVGfKESLPSQVRAPAVFKCVRVTSVDDgGEDEYAYQAVVKIGGHVFKGFLYDQGVED 154
                 3333330355*********************899*************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051425.0E-23100153IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016249.5E-30104152IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MVMITLMVMI EKGSSVVATT RRFPSDSGAF ADWSAPPSAI SGRGDDLDVV LSDPNNNNGS  60
NNSNNPATAH GVNVFPLLTA TPCLESEGIM GNISHHHVGF KESLPSQVRA PAVFKCVRVT  120
SVDDGGEDEY AYQAVVKIGG HVFKGFLYDQ GVEDKEGYPN LSELHLSGGG GGNVTSGSDG  180
GRNGISSSSP MVDRSHDVYA ASGGGLLLGG SSNYGNHPIN
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN20647.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025983159.11e-65protein LATERAL ROOT PRIMORDIUM 1
RefseqXP_028220193.11e-65protein LATERAL ROOT PRIMORDIUM 1-like
TrEMBLA0A0B2QLM21e-158A0A0B2QLM2_GLYSO; Uncharacterized protein
STRINGGLYMA20G05015.16e-67(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF57043154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12330.22e-33Lateral root primordium (LRP) protein-related
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]