PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN20732.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NAC
Protein Properties Length: 324aa    MW: 36404.2 Da    PI: 7.4638
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN20732.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1791.2e-5551311129
         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 
                 lppGfrFhPtdeel+++yL++kv++++++  ++i+ vd++k+ePwdLp k++ +ekewyfFs rd+ky+tg r+nrat+sgyWk+tgkdke+++  g l
  KHN20732.1   5 LPPGFRFHPTDEELITCYLTRKVSDSSFTS-KAIAVVDLNKCEPWDLPGKASMGEKEWYFFSLRDRKYPTGLRTNRATESGYWKTTGKDKEIFR-AGVL 101
                 79*************************999.88***************988999****************************************.999* PP

         NAM 100 vglkktLvfykgrapkgektdWvmheyrle 129
                 vg+kktLvfy+grap+gek++Wvmheyrle
  KHN20732.1 102 VGMKKTLVFYRGRAPRGEKSNWVMHEYRLE 131
                 ****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-643151IPR003441NAC domain
PROSITE profilePS5100560.0175151IPR003441NAC domain
PfamPF023656.3E-296130IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MEENLPPGFR FHPTDEELIT CYLTRKVSDS SFTSKAIAVV DLNKCEPWDL PGKASMGEKE  60
WYFFSLRDRK YPTGLRTNRA TESGYWKTTG KDKEIFRAGV LVGMKKTLVF YRGRAPRGEK  120
SNWVMHEYRL ENKHHFGLSK DEWVVCRVFQ KSLQVKRPQQ TPSSQPESPC DTASMVNEFG  180
DVELPNLINN IANSSGGLTN NISGQTCFNA DLINSVNTNM NLAMNWPVAS EVIQVPTLPS  240
LPWPSGLLNP SISVNSLLLK ALQLRSYQQR EAATDHLIAS YVPQGVSHVG TDLSSNLTAS  300
SSKVLECMPQ QQQLEQPFNL DSIW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-57415116165NO APICAL MERISTEM PROTEIN
1ut4_B3e-57415116165NO APICAL MERISTEM PROTEIN
1ut7_A3e-57415116165NO APICAL MERISTEM PROTEIN
1ut7_B3e-57415116165NO APICAL MERISTEM PROTEIN
3swm_A4e-57415119168NAC domain-containing protein 19
3swm_B4e-57415119168NAC domain-containing protein 19
3swm_C4e-57415119168NAC domain-containing protein 19
3swm_D4e-57415119168NAC domain-containing protein 19
3swp_A4e-57415119168NAC domain-containing protein 19
3swp_B4e-57415119168NAC domain-containing protein 19
3swp_C4e-57415119168NAC domain-containing protein 19
3swp_D4e-57415119168NAC domain-containing protein 19
4dul_A3e-57415116165NAC domain-containing protein 19
4dul_B3e-57415116165NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00364DAPTransfer from AT3G18400Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN20732.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028239847.10.0NAC domain-containing protein 92-like
TrEMBLA0A445JUI40.0A0A445JUI4_GLYSO; Protein CUP-SHAPED COTYLEDON 2
STRINGGLYMA07G10240.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49463356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18400.11e-115NAC domain containing protein 58
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]