PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN21028.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ARR-B
Protein Properties Length: 589aa    MW: 66083.9 Da    PI: 6.6772
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN21028.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like87.21.6e-27351404256
     G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                  +++WtpeLH+ Fv+aveqL G+++A+P++ilelmkv+gLt+++v+SHLQkYR++
  KHN21028.1 351 IKVDWTPELHKTFVKAVEQL-GIDQAIPSRILELMKVEGLTRHNVASHLQKYRMH 404
                 5899****************.********************************96 PP
2Response_reg22.65.1e-09201261109
                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTT.SEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTE CS
  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempg.mdGlellkeireeepklpiivvtahgeeedalealkaGa 94 
                   vl+ + +++ +  +r  le  +y +v ++ +  eal  +      +++ ++ ++ +    G+++l   ++++ +lp i+ + +   +++ +++ +Ga
    KHN21028.1  20 VLLLERDNISAAEIRAKLEAMDY-NVSTFCEENEALSAISSGLesFHIAIVEVSSSSgQGGFKFL---ENAK-DLPTIMTSNNHCLNTMMKCIALGA 111
                   567777788888899999*****.***************76654599999987776645566655...4555.899**9999999************ PP

                   SEEEESS--HHHHHH CS
  Response_reg  95 kdflsKpfdpeelvk 109
                    +fl Kp ++++l++
    KHN21028.1 112 VEFLRKPLSEDKLRN 126
                   ************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23007.3E-1516139No hitNo description
SuperFamilySSF521726.83E-1416138IPR011006CheY-like superfamily
SMARTSM004480.008218128IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011019.47819132IPR001789Signal transduction response regulator, receiver domain
PfamPF000723.0E-620127IPR001789Signal transduction response regulator, receiver domain
CDDcd001566.11E-821131No hitNo description
PROSITE profilePS5129415.562347406IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.3E-27347407IPR009057Homeodomain-like
SuperFamilySSF466897.35E-18349407IPR009057Homeodomain-like
TIGRFAMsTIGR015571.5E-24350405IPR006447Myb domain, plants
PfamPF002491.4E-7353402IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 589 aa     Download sequence    Send to blast
MVFSANDLQE WKDFPKGLKV LLLERDNISA AEIRAKLEAM DYNVSTFCEE NEALSAISSG  60
LESFHIAIVE VSSSSGQGGF KFLENAKDLP TIMTSNNHCL NTMMKCIALG AVEFLRKPLS  120
EDKLRNIWQH VVHKAFNARA SILSESLKPV KESVVSMLQL QTDDEQHESR VSRDIEKVSR  180
FVDNDHELSS GNDKYPAPST PQLRQGTRLL DDGDCQEQTN CSTGKESGEH EGESKSVETT  240
CGNLNAESTP QQRKSEITLV REEVESTPQQ RKSEITLVRE EVESTPQQRK SEITLVKEEV  300
DIVDASKGES VASPHTQKRK VLSNTDRNTK ALIKVGVHSD SCEIRGNQKK IKVDWTPELH  360
KTFVKAVEQL GIDQAIPSRI LELMKVEGLT RHNVASHLQK YRMHKRQILP KEERKWLNLR  420
ERSYCVKRPI MAFPPYHSNH TLPLPPVYPM WGQSGSPTAG MQIWGSPGYP FWHTTAENWH  480
WKPFPGMHAD AWGCPVLPLP PPQTPGFPYS QNMPSLLNAD AVDHTFTMPQ SSFEHYPAEE  540
VVDKVVKEAI SKPWLPLPLG LKPPSPDSVL AELSRQGISN IPPKGSNSC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A4e-16355404655Transcription factor LUX
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN21028.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150341e-106AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006579672.10.0two-component response regulator-like APRR2 isoform X1
RefseqXP_028231878.10.0two-component response regulator-like APRR2 isoform X1
SwissprotQ6LA431e-135APRR2_ARATH; Two-component response regulator-like APRR2
TrEMBLA0A0B2QMC00.0A0A0B2QMC0_GLYSO; Two-component response regulator-like APRR2
STRINGGLYMA05G06070.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35663465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18020.61e-126ARR-B family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]
  2. Gong L, et al.
    Transcriptome Profiling of the Potato (Solanum tuberosum L.) Plant under Drought Stress and Water-Stimulus Conditions.
    PLoS ONE, 2015. 10(5): p. e0128041
    [PMID:26010543]