PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN21055.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

LBD

Protein Properties

Length: 168aa MW: 18802.5 Da PI: 7.775

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN21055.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	92.1	6.8e-29	2	102	1	96
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +C++C+vlr++C++ C+l+ ++ p++q++++ +++k+FG+s ++++++++pe++r+++++sl++e++ r+ +Pv+Gavg++++++++++q+++e+ KHN21055.1 2 SCNGCRVLRKGCSDTCPLRSCLqwiesPESQRHATLFLAKFFGRSDLISFISSVPETKRPALFQSLLFEGCGRMVNPVNGAVGLLSSGKWHVCQAAVET 100 6**********************************************************************************************9998 PP DUF260 95 al 96 +l KHN21055.1 101 VL 102 65 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	17.635	1	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.9E-24	2	100	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 168 aa Download sequence Send to blast
MSCNGCRVLR KGCSDTCPLR SCLQWIESPE SQRHATLFLA KFFGRSDLIS FISSVPETKR 60 PALFQSLLFE GCGRMVNPVN GAVGLLSSGK WHVCQAAVET VLDGGVLRPS SETFTGDSDD 120 TRYHLRTLTL MHDVREMNEN SSLMNRPQEL EMASYGNHKK NQILNLFM

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN21055.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028208881.1	1e-124	LOB domain-containing protein 39-like
Swissprot	Q9SZE8	8e-60	LBD39_ARATH; LOB domain-containing protein 39
TrEMBL	A0A0B2QIB3	1e-122	A0A0B2QIB3_GLYSO; LOB domain-containing protein 39
STRING	GLYMA17G35440.1	1e-123	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF721	34	136

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37540.1	3e-62	LOB domain-containing protein 39

Publications ? help Back to Top
Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933]