PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN21142.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 207aa    MW: 24040.4 Da    PI: 9.2642
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN21142.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.51.1e-054362120
                EEETTTTEEESSHHHHHHHH CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHi 20
                + C++C+k+F+r  n++ H+
  KHN21142.1 43 FACSICSKTFNRYNNMQMHM 62
                78*****************9 PP
2zf-C2H2171.7e-05127149123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 + C +Cgk+F  k + ++H +++
  KHN21142.1 127 FMCRKCGKTFAVKGDWRTHEKNC 149
                 89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.79E-63466No hitNo description
SMARTSM003550.174365IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.454370IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.607.3E-64362IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002804565IPR007087Zinc finger, C2H2
SMARTSM0035519090122IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.23E-6113147No hitNo description
Gene3DG3DSA:3.30.160.604.4E-6123147IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035535127147IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.704127147IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MIFHVKEEEE SSKRSFHGCS FNNQERRFWI PTPAQILVGP MQFACSICSK TFNRYNNMQM  60
HMWGHGSEFR KGPDSLKGTQ PAAMLRLPCY CCAQGCKNNI NHPRAKPLKD FRTLQTHYKR  120
KHGTKPFMCR KCGKTFAVKG DWRTHEKNCG KLWYCTCGSD FKHKRSLKDH IRSFGKGHNP  180
HPPFEAFEDE KECITGSDED EVNAHHT
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. {ECO:0000305|PubMed:20541552}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN21142.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0959320.0BT095932.1 Soybean clone JCVI-FLGm-20I11 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001241401.11e-158uncharacterized protein LOC100802773
RefseqXP_028193091.11e-158zinc finger protein WIP3-like
SwissprotQ9SGD11e-111ZWIP3_ARATH; Zinc finger protein WIP3
TrEMBLA0A445HNP61e-156A0A445HNP6_GLYSO; Zinc finger protein WIP3
TrEMBLC6TEB11e-156C6TEB1_SOYBN; Uncharacterized protein
STRINGGLYMA12G09400.11e-157(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17034289
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08290.11e-114WIP domain protein 3
Publications ? help Back to Top
  1. Zhou X,Meier I
    Efficient plant male fertility depends on vegetative nuclear movement mediated by two families of plant outer nuclear membrane proteins.
    Proc. Natl. Acad. Sci. U.S.A., 2014. 111(32): p. 11900-5
    [PMID:25074908]