PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN21151.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NF-YB
Protein Properties Length: 151aa    MW: 16932.9 Da    PI: 5.2255
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN21151.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB33.21.2e-10599695
       NF-YB  6 rflPianvsrimkkvlP...anak..iskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyreleg 95
                ++lP + v r++k  l    +++   +skd      e    fi ++++ a+d c++ kr+ in ++++ al +  f ++v plk+ l+++r+ ++
  KHN21151.1  5 EELPRSIVRRVVKYKLSrcsEDGEisVSKDGLLAFSESGRIFIHYLSATANDICKESKRQIINVENVFKALEETEFPEFVCPLKASLEEFRKKNA 99
                5688888888888877522234441156788888899999***************************************************8765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.106.7E-293139IPR009072Histone-fold
PfamPF008085.4E-6675IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamilySSF471132.29E-207128IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0071897Biological ProcessDNA biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003887Molecular FunctionDNA-directed DNA polymerase activity
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 151 aa     Download sequence    Send to blast
MSEAEELPRS IVRRVVKYKL SRCSEDGEIS VSKDGLLAFS ESGRIFIHYL SATANDICKE  60
SKRQIINVEN VFKALEETEF PEFVCPLKAS LEEFRKKNAR KKVVVSKGKE DEPKKKRKLE  120
GESSDKGEGS EKGEDNDKGE DSDKGVSGDD Q
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
199117RKKVVVSKGKEDEPKKKRK
2112118PKKKRKL
3113118KKKRKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN21151.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0904511e-161BT090451.1 Soybean clone JCVI-FLGm-4D13 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028195128.11e-103DNA polymerase epsilon subunit 3-like
TrEMBLA0A445HMN31e-101A0A445HMN3_GLYSO; DNA polymerase epsilon subunit 3 (Fragment)
STRINGGLYMA12G09520.11e-102(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF118633236
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27470.15e-38nuclear factor Y, subunit B11
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]