PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN21192.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family TALE
Protein Properties Length: 584aa    MW: 64434.9 Da    PI: 8.4855
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN21192.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.92e-092863231954
                 HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
    Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                 Fe   ++yp+ +++  LAk++gLt +qV++WF N R +
  KHN21192.1 286 FEHflHPYPKDSDKVMLAKQTGLTRSQVSNWFINARVR 323
                 554459******************************88 PP
2BELL118.72.7e-38151222172
        BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                 +rqelq+kk+kL+++l+eV++rY+qy++q+q+v+ sFe++ag+g+ak+Yt+lAlk+iS++FrcLkdai++qi
  KHN21192.1 151 QRQELQMKKSKLVTMLDEVEQRYRQYHHQMQVVLTSFEQAAGVGAAKSYTALALKTISKQFRCLKDAISSQI 222
                 69*********************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005742.0E-5973220IPR006563POX domain
PfamPF075261.9E-4880219IPR006563POX domain
PROSITE profilePS5007112.082264327IPR001356Homeobox domain
SMARTSM003897.8E-10267331IPR001356Homeobox domain
CDDcd000863.22E-12267328No hitNo description
SuperFamilySSF466895.13E-17268334IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.4E-28270333IPR009057Homeodomain-like
PfamPF059203.8E-18284323IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 584 aa     Download sequence    Send to blast
MAATTHTPSS NMGCVASSVM STQIGFHRPN HLSLSLSSQQ TPYRSLSGEI HAISPASRGG  60
GGDDMRGLHN GVSSMHSVAL GSKYLKATQE LLDEVVNVGK GISKGEESME GAKKEKMKGN  120
IESTSGVGDG SSCGRENNDR AKQGVELSTA QRQELQMKKS KLVTMLDEVE QRYRQYHHQM  180
QVVLTSFEQA AGVGAAKSYT ALALKTISKQ FRCLKDAISS QIKTTSKTLG EDNCLGVKVE  240
GSRLRYVDHQ QRQQRALQLG MIQHNAWRPQ RGLPERAVSV LRAWLFEHFL HPYPKDSDKV  300
MLAKQTGLTR SQVSNWFINA RVRLWKPMVE EMYLEEVKQE PNNSSQDNNN TKGSNESSKE  360
LWSEANAAAQ ESGAMRFDQI NILQSKAESF KNNQTTSPTE ISNSNSLQSG FHLADMQSPN  420
KPKSTSEMHQ NSPGSILSVD MEMKPHHHGE TNNITREGQN NNTTTKFGIE SHGGGFGAFP  480
NMEDIGRFHH HVTEQLAPRF HGNGVSLTLG LPHSTENNLS LSGTTQHGFL SQNMHLGMRN  540
SENDEFCGAI NTTPPSSHSG ISYESIDIQN RKRFAAQLLR DFVA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A2e-16273331563Homeobox protein Meis2
3k2a_B2e-16273331563Homeobox protein Meis2
4xrs_A2e-16273330158Homeobox protein Meis1
4xrs_B2e-16273330158Homeobox protein Meis1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN21192.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003540818.10.0BEL1-like homeodomain protein 1
RefseqXP_006592357.10.0BEL1-like homeodomain protein 1
RefseqXP_028194674.10.0BEL1-like homeodomain protein 1
RefseqXP_028194675.10.0BEL1-like homeodomain protein 1
SwissprotQ9SJ561e-118BLH1_ARATH; BEL1-like homeodomain protein 1
TrEMBLA0A445HN010.0A0A445HN01_GLYSO; BEL1-like homeodomain protein 1 isoform A
TrEMBLK7LTX20.0K7LTX2_SOYBN; Uncharacterized protein
STRINGGLYMA12G10030.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16273492
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35940.31e-121BEL1-like homeodomain 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]