PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN21412.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family LBD
Protein Properties Length: 174aa    MW: 19471.2 Da    PI: 8.0649
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN21412.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26091.11.3e-282102196
      DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                 +C++C+vlr++C++ C+l+ ++      ++q++++ +++k+FG+s ++++++++pe++r+++++sl++e++ r+ +Pv+Gavg++++++++++q+++++
  KHN21412.1   2 SCNGCRVLRKGCSDTCPLRSCLqwiesSESQRHATLFLAKFFGRSDLMSFISSVPETKRPALFQSLLFEGCGRTVNPVNGAVGLLWSGNWHVCQAAVQA 100
                 6*********************99987778899**************************************************************9987 PP

      DUF260  95 al 96 
                 ++
  KHN21412.1 101 VQ 102
                 65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089116.8981107IPR004883Lateral organ boundaries, LOB
PfamPF031952.7E-242101IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSDTCPLR SCLQWIESSE SQRHATLFLA KFFGRSDLMS FISSVPETKR  60
PALFQSLLFE GCGRTVNPVN GAVGLLWSGN WHVCQAAVQA VQTVLSGGVL RPLAETFTGD  120
SDDTRYHLRP LTLMHDVREM NDNSSLMNRV NRPQESEMAS YDGHKKNQIL NLFM
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN21412.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150362e-39AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003545336.11e-124LOB domain-containing protein 39 isoform X1
RefseqXP_028198303.11e-124LOB domain-containing protein 39-like isoform X1
SwissprotQ9SZE85e-62LBD39_ARATH; LOB domain-containing protein 39
TrEMBLA0A0B2QNX51e-127A0A0B2QNX5_GLYSO; LOB domain-containing protein 39
STRINGGLYMA14G09750.21e-124(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF72134136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37540.11e-58LOB domain-containing protein 39
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]