PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN21448.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 243aa    MW: 26838.2 Da    PI: 7.8741
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN21448.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.23.1e-1676126155
         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 + y+GVr++   ++Wv+e+r+p   +k+ r++lg++ ++e+Aa+a++ a ++l+g
  KHN21448.1  76 PVYRGVRQRN-GNKWVCEVREP---NKKSRIWLGTYPSPEMAARAHDVAVLALKG 126
                 68*****999.9******9998...347**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008476.0E-1276126IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-2077136IPR016177DNA-binding domain
PROSITE profilePS5103221.31177134IPR001471AP2/ERF domain
SMARTSM003801.7E-2677140IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-2877136IPR001471AP2/ERF domain
PRINTSPR003674.0E-77889IPR001471AP2/ERF domain
CDDcd000182.73E-2778136No hitNo description
PRINTSPR003674.0E-7100116IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MDVTMKKVES ESPYYCSSSS PSSTSSESKL SSASPCNPNS SPDPSSWHAE TSKKVVVLIP  60
HKRKAGRKKF RETRHPVYRG VRQRNGNKWV CEVREPNKKS RIWLGTYPSP EMAARAHDVA  120
VLALKGTSAV FNFPDSVSLL PVANSSSAAD IRLAASKVSS VFGPSSSSSS RVETKPCLVD  180
GFVKTENNVD EVKTVFFDEE AFYNMPVFLD SMAEALLITP PSMKRAFDWD EVDCETDLTL  240
WTD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-12751391277Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}.
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription. {ECO:0000269|PubMed:17136305}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00557DAPTransfer from AT5G51990Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN21448.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By calcium ion, methyl-jasmonate (MeJA), cold, drought, and high salinity stress. {ECO:0000269|PubMed:17136305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150406e-87AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028186649.11e-178dehydration-responsive element-binding protein 1F-like
SwissprotA2WZI45e-54DRE1F_ORYSI; Dehydration-responsive element-binding protein 1F
SwissprotQ8S9Z55e-54DRE1F_ORYSJ; Dehydration-responsive element-binding protein 1F
TrEMBLA0A445IDA01e-177A0A445IDA0_GLYSO; Dehydration-responsive element-binding protein 1F
STRINGGLYMA13G39540.11e-140(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24333224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25470.11e-51C-repeat/DRE binding factor 2
Publications ? help Back to Top
  1. Wang Q, et al.
    Overexpression of a rice OsDREB1F gene increases salt, drought, and low temperature tolerance in both Arabidopsis and rice.
    Plant Mol. Biol., 2008. 67(6): p. 589-602
    [PMID:18470484]
  2. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]
  3. Liu HH,Wang YG,Wang SP,Li HJ
    Cloning and characterization of peanut allene oxide cyclase gene involved in salt-stressed responses.
    Genet. Mol. Res., 2015. 14(1): p. 2331-40
    [PMID:25867379]