PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN21481.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 200aa    MW: 22822.2 Da    PI: 9.2115
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN21481.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H221.94.5e-071941123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                + C+ Cgk F r  nL+ H+r H
  KHN21481.1 19 HYCQVCGKGFERDANLRMHMRAH 41
                68*******************99 PP
2zf-C2H2130.00032115138123
                 EEETTTT.EEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCg.ksFsrksnLkrHirtH 23 
                 y+C+ C+ k Fs  s+L++H + +
  KHN21481.1 115 YVCKRCNqKQFSVLSDLRTHEKHC 138
                 9*******************9876 PP
3zf-C2H211.80.00072146161520
                 TTTEEESSHHHHHHHH CS
     zf-C2H2   5 dCgksFsrksnLkrHi 20 
                  Cg+sFsrk+ L+ H 
  KHN21481.1 146 TCGTSFSRKDKLMGHV 161
                 6************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.68E-61744No hitNo description
Gene3DG3DSA:3.30.160.601.4E-61946IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.5911946IPR007087Zinc finger, C2H2
SMARTSM003550.00581941IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002802141IPR007087Zinc finger, C2H2
SMARTSM0035517077110IPR015880Zinc finger, C2H2-like
SMARTSM0035523115137IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MNSDIIELDA ADLLAKYTHY CQVCGKGFER DANLRMHMRA HGDEYKTNAA LSNPIKNKGN  60
LLEGGRECLM STVKPKYSCP QEGCRWNQRH VKFQPLKSMI CAKNHYKRSH CPKMYVCKRC  120
NQKQFSVLSD LRTHEKHCGD LKWQCTCGTS FSRKDKLMGH VALFVGHQPA AAINNSNALS  180
FSAKLEQQHT LQMQIEDSSR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Together with STOP1, plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation. {ECO:0000269|PubMed:23935008}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN21481.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150401e-165AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028189001.11e-152protein SENSITIVE TO PROTON RHIZOTOXICITY 2-like isoform X1
RefseqXP_028189003.11e-152protein SENSITIVE TO PROTON RHIZOTOXICITY 2-like isoform X3
SwissprotQ0WT246e-90STOP2_ARATH; Protein SENSITIVE TO PROTON RHIZOTOXICITY 2
TrEMBLA0A445IDG51e-151A0A445IDG5_GLYSO; Protein SENSITIVE TO PROTON RHIZOTOXICITY 2 isoform A
STRINGGLYMA13G39610.21e-145(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80993045
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22890.13e-92C2H2 family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]