PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN21482.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

C2H2

Protein Properties

Length: 249aa MW: 26976.2 Da PI: 8.1115

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN21482.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.3	0.0011	118	140	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+++F++ L H ++ KHN21482.1 118 YECKTCNRTFPSFQALGGHRARC 140 99*********999998887776 PP
2	zf-C2H2	13.6	0.0002	158	180	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg F++ L H+r+H KHN21482.1 158 HECSICGSEFTSGQALGGHMRRH 180 78********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.13E-6	117	180	No hit	No description
Pfam	PF13912	8.0E-11	117	139	IPR007087	Zinc finger, C2H2
SMART	SM00355	51	118	138	IPR015880	Zinc finger, C2H2-like
Pfam	PF13912	1.7E-11	158	182	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	10.076	158	185	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.019	158	180	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	160	180	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 249 aa Download sequence Send to blast
MDMEELVSCN NNDATNIAKG KRTKRRLRPL VPTTTTITTV TAATTPIMTS SCSSASCGGG 60 SSSSTTFEEE EEDMANCLIL LAQGKVGGDP PHRHKDLYGS DVKTEKLGST KVDHFYVYEC 120 KTCNRTFPSF QALGGHRARC GNNNKVGLNF HGNKSKIHEC SICGSEFTSG QALGGHMRRH 180 RASTNNNNIV QTTTTTSNGA VDVKPRNVLE LDLNLPAPED DLRDSKFQFP ATQNSMMRSA 240 APALVGCHY

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may be involved in stress responses. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN21482.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By gibberellin and H(2)O(2). Down-regulated by ascorbate. {ECO:0000269\|PubMed:12837949, ECO:0000269\|PubMed:16244149}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KT031151	0.0	KT031151.1 Glycine max clone HN_CCL_218 C2H2-Zn transcription factor (Glyma13g39620.1) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001304533.2	1e-114	C2H2-type zinc finger protein 3
Refseq	XP_028192885.1	1e-114	zinc finger protein ZAT5-like
Swissprot	Q681X4	1e-49	ZAT5_ARATH; Zinc finger protein ZAT5
TrEMBL	A0A0B2R6Z2	1e-113	A0A0B2R6Z2_GLYSO; Zinc finger protein ZAT5
TrEMBL	I1LTN7	1e-113	I1LTN7_SOYBN; C2H2-Zn transcription factor
STRING	GLYMA12G30270.1	1e-113	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF586	34	141

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28200.1	8e-49	C2H2 family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933]