PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN21570.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 226aa    MW: 25752.2 Da    PI: 6.0509
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN21570.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH23.21.2e-07117164455
                 HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 +h+ +Er RR +iN+++  L+ ++P +     k +  a +L + ++Y++sLq
  KHN21570.1 117 SHSLAERVRRGKINEKLRCLQNIVPGC----YKTMGMAIMLDEIINYVQSLQ 164
                 8*************************8....355888999999999999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.15E-16111181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.81E-9111168No hitNo description
Gene3DG3DSA:4.10.280.107.1E-16113176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.589113163IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.8E-5117164IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.5E-7119169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MEMQNLMMPF SCESFLGSPE AEFAGNLEEN FPDHNEVPVL VPIINSVKNE IHEGQKRKAT  60
DIWEPSSANS TPAVFESGSK TKNSCGRGKR VKRNMIEDKK PNEVVHVRAK RGQATDSHSL  120
AERVRRGKIN EKLRCLQNIV PGCYKTMGMA IMLDEIINYV QSLQHQVEFL SMKLNAASTY  180
YDFNSESDVL ETMQRARASE VKELDRYVRE ECEGVSCFEP TWSWPL
Functional Description ? help Back to Top
Source Description
UniProtPositive regulator of brassinosteroid signaling. {ECO:0000269|PubMed:12454087}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN21570.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by brassinosteroid, auxin, ethylene and cytokinin, and repressed by abscisic acid. Insensitive to gibberellic acid. {ECO:0000269|PubMed:12454087}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1360591e-133BT136059.1 Lotus japonicus clone JCVI-FLLj-3K3 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003525253.11e-170transcription factor BEE 1-like
RefseqXP_028231020.11e-170transcription factor BEE 1-like
SwissprotQ8GZ131e-57BEE1_ARATH; Transcription factor BEE 1
TrEMBLA0A445KT751e-169A0A445KT75_GLYSO; Transcription factor BEE 1
TrEMBLI1K5R21e-169I1K5R2_SOYBN; Uncharacterized protein
STRINGGLYMA05G35060.11e-170(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33603467
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18400.15e-60BR enhanced expression 1
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]
  2. Petridis A,Döll S,Nichelmann L,Bilger W,Mock HP
    Arabidopsis thaliana G2-LIKE FLAVONOID REGULATOR and BRASSINOSTEROID ENHANCED EXPRESSION1 are low-temperature regulators of flavonoid accumulation.
    New Phytol., 2016. 211(3): p. 912-25
    [PMID:27125220]