PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN21616.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ARR-B
Protein Properties Length: 495aa    MW: 55935.3 Da    PI: 6.8581
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN21616.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like86.62.4e-27187241155
     G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                 ++r++Wt eLH++F++av+qLG ++ A+Pk+ilelm+v+gLt+e+v+SHLQkYR 
  KHN21616.1 187 RQRIVWTDELHNKFLDAVSQLGDINTAVPKRILELMNVPGLTREQVASHLQKYRH 241
                 58****************************************************6 PP
2Response_reg63.11.4e-21201281109
                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS
  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 
                   vl++d + +v+e+++q+++  +y ev + +++  al+ +++++  +Dlil+D+ mp++d +el+keir+e  ++p iv++  ++ + + e +k Ga 
    KHN21616.1  20 VLVIDHDSNVLENVKQMCNGCHY-EVITYSNALLALNHVRRNKegIDLILIDVGMPNLDDYELVKEIRKEI-DVPFIVMSFDDSRSSRMESIKQGAC 114
                   89*********************.999************888889**********************9988.9*******9999************* PP

                   EEEESS--HHHHHH CS
  Response_reg  96 dflsKpfdpeelvk 109
                   d+  Kpf+++++++
    KHN21616.1 115 DYWKKPFHEDQVRN 128
                   **********9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521722.13E-2618140IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23003.4E-2918161No hitNo description
SMARTSM004484.0E-1918130IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011032.72919134IPR001789Signal transduction response regulator, receiver domain
PfamPF000726.2E-1720128IPR001789Signal transduction response regulator, receiver domain
CDDcd001564.99E-2021127No hitNo description
Gene3DG3DSA:1.10.10.607.2E-27184243IPR009057Homeodomain-like
PROSITE profilePS5129415.306184244IPR017930Myb domain
SuperFamilySSF466895.29E-19185243IPR009057Homeodomain-like
TIGRFAMsTIGR015574.8E-25188241IPR006447Myb domain, plants
PfamPF002492.1E-8191240IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 495 aa     Download sequence    Send to blast
MAKIPTQEKV PNQCPVVLKV LVIDHDSNVL ENVKQMCNGC HYEVITYSNA LLALNHVRRN  60
KEGIDLILID VGMPNLDDYE LVKEIRKEID VPFIVMSFDD SRSSRMESIK QGACDYWKKP  120
FHEDQVRNMW VHVARKAWND NKVDIKCGRL EDNDKRKREE NDSKATRGGV KRGREPKRVN  180
AGTSSKRQRI VWTDELHNKF LDAVSQLGDI NTAVPKRILE LMNVPGLTRE QVASHLQKYR  240
HQLLKNNSNE VKMQQKNGEP LATTKPARLE DQAFAVTGRV PCEMPIEEQW PNHPGPGVEQ  300
QGTSYGHHPP LNIGNAETRI PQSMIMNVDE ESGYRVWSPS ADTMRQLSIQ DNNALTMVDT  360
LHLQHRQQRQ EPLIMHPPSV NLHPSCILQV SEDSPIFHGY TTPAPAPAPA PAPPAFHAAA  420
NTLVPYVSGS SDSLYQQPPL VNFGYDDKQM YIPGTPRGHQ IKESAGDEDH DTLVDIYMST  480
NTGMDFASRN HLVRV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A7e-17183245162ARR10-B
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN21616.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2358703e-50AC235870.2 Glycine max clone GM_WBb0130P22, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025984371.10.0uncharacterized protein LOC102670418
TrEMBLA0A0R0K5470.0A0A0R0K547_SOYBN; Uncharacterized protein
TrEMBLA0A445KTV50.0A0A445KTV5_GLYSO; Two-component response regulator ORR21
STRINGGLYMA05G34523.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3539822
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16857.12e-53response regulator 1
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]