PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN21898.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

C2H2

Protein Properties

Length: 253aa MW: 28606.3 Da PI: 8.1743

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN21898.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.6	4.7e-05	94	113	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp C k+F+r n++ H+ KHN21898.1 94 FPCPLCFKTFNRYNNMQMHM 113 89*****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	8.76E-5	90	116	No hit	No description
PROSITE profile	PS50157	9.515	94	121	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	7.2E-6	94	113	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE pattern	PS00028	0	96	116	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	1.7E-5	160	198	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.5E-4	164	198	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 253 aa Download sequence Send to blast
MEVDKKKKEL SSSSSCLDEE DAAVTVALHL GLPSTSDLAS SSLYSSTEAS SDKEEEEEEV 60 VLTDSSGLLL SNRINRGQYW IPTSSQILIG PTQFPCPLCF KTFNRYNNMQ MHMWGHGSQY 120 RKGPESLRGT QPTAMLRLPC YCCAPGCKNN IDHPRAKPLK DFRTLQTHYK RKHGTKPFVC 180 RKCCKAFAVR GDWRTHEKNC GKRWYCSCGS DFKHKRSLKD HIKAFGYGHT ACGNDRCNLD 240 QDHDDQLVGS EIE

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcriptional regulator. {ECO:0000305\|PubMed:20541552}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN21898.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT095633	1e-160	BT095633.1 Soybean clone JCVI-FLGm-19L21 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003539062.1	0.0	zinc finger protein WIP2
Refseq	XP_028189190.1	0.0	zinc finger protein WIP2-like
Swissprot	Q8W031	1e-116	ZWIP5_ARATH; Zinc finger protein WIP5
TrEMBL	A0A445I0Z6	0.0	A0A445I0Z6_GLYSO; Zinc finger protein WIP5
TrEMBL	I1LJV3	0.0	I1LJV3_SOYBN; Uncharacterized protein
STRING	GLYMA11G14100.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF170	34	289

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57670.1	1e-111	C2H2 family protein

Publications ? help Back to Top
Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933] Crawford BC, et al. Plant development. Genetic control of distal stem cell fate within root and embryonic meristems. Science, 2015. 347(6222): p. 655-9 [PMID:25612610]