PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN21921.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 168aa    MW: 18805.2 Da    PI: 6.0176
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN21921.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.20.000133456123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                ++C+ C + Fs+   L  H++ H
  KHN21921.1 34 FECNFCRRGFSNAQALGGHMNIH 56
                89*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.9E-52760IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.91E-73161No hitNo description
PROSITE profilePS5015711.4063461IPR007087Zinc finger, C2H2
PROSITE patternPS0002803656IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MESDLHHDHQ AAASENHPSD GEEQGASHVT SRSFECNFCR RGFSNAQALG GHMNIHRKDK  60
AKLKQQQSSN QIQQDQAKSY GEDSNKQKWN WNVSLQEHAI HKRQQLPLFA ESPTSSETQK  120
PQQGQTQTTT EQASLSTQDS SSELDLELRL GPEPQDSSAA ETGTRNFF
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN21921.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0925911e-179BT092591.1 Soybean clone JCVI-FLGm-11E20 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006590971.11e-122transcriptional regulator TAC1
RefseqXP_028187902.11e-122transcriptional regulator TAC1-like
TrEMBLI1LJY11e-120I1LJY1_SOYBN; Uncharacterized protein
STRINGGLYMA11G14400.11e-121(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33353162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53820.11e-14C2H2 family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]