PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN21982.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 144aa    MW: 15907.6 Da    PI: 10.2669
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN21982.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.10.00067092123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                ++Cp+Cg  F     L  H+r+H
  KHN21982.1 70 HQCPICGIEFAIGQALGGHMRKH 92
                79*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.8472855IPR007087Zinc finger, C2H2
SMARTSM003550.22850IPR015880Zinc finger, C2H2-like
SuperFamilySSF576679.91E-82892No hitNo description
PfamPF139125.5E-112852IPR007087Zinc finger, C2H2
PROSITE patternPS0002803050IPR007087Zinc finger, C2H2
SMARTSM003550.0747092IPR015880Zinc finger, C2H2-like
PfamPF139124.6E-87094IPR007087Zinc finger, C2H2
PROSITE profilePS501578.6637092IPR007087Zinc finger, C2H2
PROSITE patternPS0002807292IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 144 aa     Download sequence    Send to blast
MASCLMLLTK VSDTETPSRK RVLSGGDFKC KTCNRKFQSF QALGGHRASH KKLKLMASNL  60
SCSTVTQKMH QCPICGIEFA IGQALGGHMR KHRASLNDGL ITHDHVVPTS SGTKRLRLCL  120
DLNLAPYEND LNLNLRTPTL NLFV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN21982.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat stress. {ECO:0000269|PubMed:18201973}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028191364.11e-103zinc finger protein ZAT8-like
SwissprotQ9LX853e-28ZAT8_ARATH; Zinc finger protein ZAT8
TrEMBLA0A445I1E71e-102A0A445I1E7_GLYSO; Zinc finger protein ZAT8
STRINGGLYMA11G15140.11e-101(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31634175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28710.12e-31C2H2 family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]