PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN22108.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family TALE
Protein Properties Length: 308aa    MW: 35372.6 Da    PI: 6.5165
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN22108.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.21.2e-072572892254
                 SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
    Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                  +yp++e++++L +++gL+ +q+ +WF N+R +
  KHN22108.1 257 WPYPTEEDKARLVQETGLQLKQINNWFINQRKR 289
                 59*****************************87 PP
2ELK29.41.9e-10210231122
         ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                 ELKh+L+++Y+++++++++E++
  KHN22108.1 210 ELKHELKQGYKEKIVDIREEIL 231
                 9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012554.5E-184589IPR005540KNOX1
PfamPF037901.9E-174788IPR005540KNOX1
SMARTSM012565.3E-2698153IPR005541KNOX2
PfamPF037917.2E-19103152IPR005541KNOX2
PROSITE profilePS512139.969210230IPR005539ELK domain
SMARTSM011886.1E-4210231IPR005539ELK domain
PfamPF037896.6E-7210231IPR005539ELK domain
PROSITE profilePS5007111.612230293IPR001356Homeobox domain
SuperFamilySSF466894.28E-16232297IPR009057Homeodomain-like
SMARTSM003891.1E-10232297IPR001356Homeobox domain
CDDcd000861.14E-10233293No hitNo description
Gene3DG3DSA:1.10.10.607.6E-25237294IPR009057Homeodomain-like
PfamPF059207.6E-18250289IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MQQRLPPPTW LNNVNVNARQ QNFLDSEKSV DRNRSESNCE SEDLREYKAD ILGHPLYDQL  60
LSAHVSCLRI ATPVDQLPRI DAQLQQSQRV VEKYSALAHN GVVDEKELDQ FMTHYVLLLC  120
AFKEQLQQHV RVHAMEAVMA CWDLEQSLQS LTGVSPGEGT GATMSDDEDD QAESNANLYE  180
GSLDGGETLG FGPLVPTESE RSLMERVRHE LKHELKQGYK EKIVDIREEI LRKRRAGKLP  240
GDTTSLLKAW WQSHSKWPYP TEEDKARLVQ ETGLQLKQIN NWFINQRKRN WHTNNPSSSS  300
NSKSKRKR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1286307RKRNWHTNNPSSSSNSKSKRKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN22108.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006594232.10.0homeobox protein knotted-1-like LET12 isoform X3
RefseqXP_028189926.10.0homeobox protein knotted-1-like LET12 isoform X3
SwissprotP480001e-162KNAT3_ARATH; Homeobox protein knotted-1-like 3
TrEMBLA0A0B2QQE20.0A0A0B2QQE2_GLYSO; Homeobox protein knotted-1-like 3
TrEMBLA0A445I5H90.0A0A445I5H9_GLYSO; Homeobox protein knotted-1-like 3 isoform B
STRINGGLYMA13G22530.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101734108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.11e-159KNOTTED1-like homeobox gene 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]