PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN22110.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

YABBY

Protein Properties

Length: 186aa MW: 20961.9 Da PI: 8.1655

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN22110.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	202.2	2e-62	6	159	3	170
YABBY 3 vfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvssekl 101 ++ ++eq+Cy+ CnfCn +lavsvP +slf +vtvrCGhCt+l svn+a a q l+ ++ ++ + e + ++ ++++ ++ +++ KHN22110.1 6 IDVAPEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQSLSWQDV---QGSGHCNPEYRIDTGSTSK-------CNNRIAM--- 91 66789******************************************99999998884...4444444444443333222.......2222222... PP YABBY 102 senedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 + +v++ v+rPPekrqrvPsayn+fikeeiqrika+nPdishreafs+aaknWahfP+ihfgl KHN22110.1 92 R-APTTHVTEERVVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGL 159 2.2233344445689**************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	5.2E-70	9	159	IPR006780	YABBY protein
SuperFamily	SSF47095	4.19E-8	103	152	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	1.3E-4	107	153	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009944	Biological Process	polarity specification of adaxial/abaxial axis
GO:1902183	Biological Process	regulation of shoot apical meristem development
GO:2000024	Biological Process	regulation of leaf development

Sequence ? help Back to Top
Protein Sequence Length: 186 aa Download sequence Send to blast
MSSCSIDVAP EQLCYIPCNF CNIVLAVSVP CSSLFDIVTV RCGHCTNLWS VNMAAAFQSL 60 SWQDVQGSGH CNPEYRIDTG STSKCNNRIA MRAPTTHVTE ERVVNRPPEK RQRVPSAYNQ 120 FIKEEIQRIK ANNPDISHRE AFSTAAKNWA HFPHIHFGLM LESNNQVKME NVSEKHLMSR 180 AALLNK

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269\|PubMed:19837869}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN22110.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT095084	0.0	BT095084.1 Soybean clone JCVI-FLGm-6P7 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001344755.1	1e-139	protein YABBY 13
Refseq	XP_028188440.1	1e-139	axial regulator YABBY 5-like
Swissprot	Q8GW46	5e-90	YAB5_ARATH; Axial regulator YABBY 5
TrEMBL	A0A0B2QKW2	1e-137	A0A0B2QKW2_GLYSO; Axial regulator YABBY 5
TrEMBL	I1LZN8	1e-137	I1LZN8_SOYBN; Uncharacterized protein
STRING	GLYMA13G22620.1	1e-138	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1124	34	112

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26580.2	2e-92	YABBY family protein

Publications ? help Back to Top
Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933] Husbands AY,Benkovics AH,Nogueira FT,Lodha M,Timmermans MC The ASYMMETRIC LEAVES Complex Employs Multiple Modes of Regulation to Affect Adaxial-Abaxial Patterning and Leaf Complexity. Plant Cell, 2015. 27(12): p. 3321-35 [PMID:26589551]