PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN22170.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

FAR1

Protein Properties

Length: 186aa MW: 21763 Da PI: 9.0249

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN22170.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	83.4	3.7e-26	22	111	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY+eYA++ GF vr ++ ++s+ +++i++r+f C+k+g++ + ++kt+ +++ra+ r gC+a++ vk ++ gkw+vtk+++eH+H l+ KHN22170.1 22 NFYEEYARREGFVVRLDRCHRSEVDKQIISRRFSCNKQGFHVRVRNKTKPVHKPRASIREGCEAMMYVKVNTCGKWVVTKFVKEHSHLLN 111 6*****************************************9999*************************************885 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.8E-23	22	111	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 186 aa Download sequence Send to blast
EGSSIEEPNV GMEFQSEEAA KNFYEEYARR EGFVVRLDRC HRSEVDKQII SRRFSCNKQG 60 FHVRVRNKTK PVHKPRASIR EGCEAMMYVK VNTCGKWVVT KFVKEHSHLL NASALPYNSL 120 IESKDRIIQQ LAKELEHQDR LCQHYRRQLF SLLETVDEQT KCLSTKVELV VNTVKKLENE 180 VQKPLI

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN22170.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT097755	0.0	BT097755.1 Soybean clone JCVI-FLGm-16I6 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006576241.1	1e-137	uncharacterized protein LOC100802375 isoform X1
Refseq	XP_028224876.1	1e-137	protein FAR1-RELATED SEQUENCE 5-like isoform X1
TrEMBL	A0A445L9L5	1e-136	A0A445L9L5_GLYSO; Protein FAR1-RELATED SEQUENCE 5 isoform B
TrEMBL	K7KDZ0	1e-136	K7KDZ0_SOYBN; Uncharacterized protein
STRING	GLYMA03G22670.2	1e-137	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF965	31	104

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43280.1	7e-55	FAR1 family protein