PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN22265.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

C2H2

Protein Properties

Length: 465aa MW: 49659.9 Da PI: 9.113

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN22265.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.3	1.3e-05	58	80	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H KHN22265.1 58 FVCEICNKGFQRDQNLQLHRRGH 80 89*******************88 PP
2	zf-C2H2	13.6	0.0002	134	156	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k + +s+ k H++t+ KHN22265.1 134 WQCERCSKKYAVHSDWKAHMKTC 156 58*******************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	1.5E-5	57	80	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	8.2E-7	57	80	No hit	No description
PROSITE profile	PS50157	10.949	58	80	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.017	58	80	IPR015880	Zinc finger, C2H2-like
Pfam	PF12171	7.3E-5	58	80	IPR022755	Zinc finger, double-stranded RNA binding
PROSITE pattern	PS00028	0	60	80	IPR007087	Zinc finger, C2H2
SMART	SM00355	220	99	129	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	1.8E-4	122	155	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	8.2E-7	129	155	No hit	No description
SMART	SM00355	84	134	154	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 465 aa Download sequence Send to blast
MTEPQNPSPL THSPALEIAP QTQPLPPPKK KRNLPGMPDP DAEVIALSPK TLLATNRFVC 60 EICNKGFQRD QNLQLHRRGH NLPWKLRQRG SKEPQKKAYV CPEPSCVHHN PARALGDLTG 120 IKKHFCRKHG EKKWQCERCS KKYAVHSDWK AHMKTCGSRE YRCDCGTLFS RRDSFITHRA 180 FCDVLAQESA RAQDQAQGGS SNSYVVVVSS SPPTPPLTPS ASVVSPTLSI QSSEIPENPS 240 TKVSPTSPNA SCFVTSSSST PSSTTSVLAP STTPTTPSQS PSNSTCSFSN LMSNLARSEN 300 SNALMREPTS LSLSTPLYHS NNDPLHYTAL PQPALSATAL LQKAAQMGAS NASLLRGLGL 360 ARTSSSFGKD EGVNINATTT LQWNGQVKQE NHPVVDNLGL GLPCGSGSVP DVMMGPTTPF 420 VGQPMTRDLL GLSVGGGATS RGGLSALLTS FGGNFDSPSE GGVHR

Sequence ? help Back to Top

Protein Sequence Length: 465 aa Download sequence Send to blast

MTEPQNPSPL THSPALEIAP QTQPLPPPKK KRNLPGMPDP DAEVIALSPK TLLATNRFVC  60
EICNKGFQRD QNLQLHRRGH NLPWKLRQRG SKEPQKKAYV CPEPSCVHHN PARALGDLTG  120
IKKHFCRKHG EKKWQCERCS KKYAVHSDWK AHMKTCGSRE YRCDCGTLFS RRDSFITHRA  180
FCDVLAQESA RAQDQAQGGS SNSYVVVVSS SPPTPPLTPS ASVVSPTLSI QSSEIPENPS  240
TKVSPTSPNA SCFVTSSSST PSSTTSVLAP STTPTTPSQS PSNSTCSFSN LMSNLARSEN  300
SNALMREPTS LSLSTPLYHS NNDPLHYTAL PQPALSATAL LQKAAQMGAS NASLLRGLGL  360
ARTSSSFGKD EGVNINATTT LQWNGQVKQE NHPVVDNLGL GLPCGSGSVP DVMMGPTTPF  420
VGQPMTRDLL GLSVGGGATS RGGLSALLTS FGGNFDSPSE GGVHR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	1e-32	130	191	3	64	Zinc finger protein JACKDAW
5b3h_F	1e-32	130	191	3	64	Zinc finger protein JACKDAW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269\|PubMed:21571950, ECO:0000269\|PubMed:25035403}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN22265.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015035	1e-140	AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003527695.1	0.0	protein indeterminate-domain 2
Refseq	XP_028234811.1	0.0	zinc finger protein GAI-ASSOCIATED FACTOR 1-like
Swissprot	Q9LVQ7	1e-126	IDD1_ARATH; Zinc finger protein ENHYDROUS
TrEMBL	A0A445K420	0.0	A0A445K420_GLYSO; Protein indeterminate-domain 1 isoform B
STRING	GLYMA06G03630.2	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2218	32	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50700.1	1e-107	indeterminate(ID)-domain 2

Publications ? help Back to Top
Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933] Fukazawa J, et al. DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis. Plant Cell, 2014. 26(7): p. 2920-38 [PMID:25035403] Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]