PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN22532.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WRKY
Protein Properties Length: 174aa    MW: 19576.4 Da    PI: 8.3191
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN22532.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY802.6e-25261158
                ---SS-EEEEEEE--.TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS CS
        WRKY  1 ldDgynWrKYGqKev.kgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnh 58
                ++Dgy+W+KYGqK+v k+++ pr+Y+ C+ a +C+  kkv+rs +d+++++ tYeg+Hnh
  KHN22532.1  2 VKDGYQWKKYGQKKVtKDNPSPRAYFECSLApSCSNLKKVQRSIQDKSILVATYEGKHNH 61
                58**********998689***********999**************************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081121.31164IPR003657WRKY domain
SMARTSM007745.0E-22263IPR003657WRKY domain
SuperFamilySSF1182902.48E-19263IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.3E-22262IPR003657WRKY domain
PfamPF031064.7E-20361IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
MVKDGYQWKK YGQKKVTKDN PSPRAYFECS LAPSCSNLKK VQRSIQDKSI LVATYEGKHN  60
HGVFHDLLKP SSSIPETSIM INNLPITNMP NDKDTLNIDL ALCNSDQTDI RLCDDVKQQN  120
HRGSKSKIEE YVTPLVKDPD FIMPLAEAVA HSLKSQTYKQ VGLNLNLGLP EPHL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-161611674Probable WRKY transcription factor 4
2ayd_A2e-161611371WRKY transcription factor 1
2lex_A2e-161611674Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN22532.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003528286.11e-127probable WRKY transcription factor 40
RefseqXP_028236666.11e-127probable WRKY transcription factor 40
TrEMBLA0A0B2QS701e-126A0A0B2QS70_GLYSO; Putative WRKY transcription factor 40
TrEMBLA0A0R0JK301e-126A0A0R0JK30_SOYBN; Uncharacterized protein (Fragment)
STRINGGLYMA06G23990.21e-127(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF73983044
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80840.12e-31WRKY DNA-binding protein 40