PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN22598.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family M-type_MADS
Protein Properties Length: 147aa    MW: 17073.6 Da    PI: 7.4397
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN22598.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF28.42.1e-09750144
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                k+ie+  +r+  + kRr+ +lK  e L +LCd++++  i+++ +
  KHN22598.1  7 KPIEDFVKRKACYRKRREILLKMVEDLTTLCDIDACAFILGPGD 50
                689***********************************999865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006612.362147IPR002100Transcription factor, MADS-box
CDDcd002661.63E-15181No hitNo description
SuperFamilySSF554555.49E-16184IPR002100Transcription factor, MADS-box
SMARTSM004322.1E-5158IPR002100Transcription factor, MADS-box
PfamPF003193.1E-10949IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 147 aa     Download sequence    Send to blast
RKKITQKPIE DFVKRKACYR KRREILLKMV EDLTTLCDID ACAFILGPGD DVPNVWPSHD  60
KAKEMLDKFE NAPLSTRLKK NITPQVYIER ANNKVENQLV ELRKKNDEID MSDLMHQIHD  120
DGRSLSDFDA SDISRLLSYV EEKLKGV
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN22598.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014629797.11e-102MADS-box transcription factor PHERES 2
TrEMBLA0A0B2QRW11e-104A0A0B2QRW1_GLYSO; Agamous-like MADS-box protein AGL92 (Fragment)
TrEMBLA0A0R0KM601e-101A0A0R0KM60_SOYBN; Uncharacterized protein
TrEMBLA0A445LEM51e-101A0A445LEM5_GLYSO; MADS-box transcription factor PHERES 2
STRINGXP_007162987.18e-64(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15602811
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65300.11e-19AGAMOUS-like 38
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]