PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN22657.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 249aa    MW: 28409.4 Da    PI: 5.4986
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN22657.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.26.9e-1459102755
                 HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   Er+RR+++N+++  Lr ++P+      +K++Ka+i + A+eYI++L+
  KHN22657.1  59 VSERNRRKKLNDRLLALRAVVPNI-----TKMDKASIIKDAIEYIQHLH 102
                 57*********************7.....7*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474597.98E-1851118IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.15852101IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.53E-1355106No hitNo description
Gene3DG3DSA:4.10.280.106.9E-1758119IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.3E-1558107IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.5E-1159101IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MENIGEDQYG YLPETDLFFP NEDLGSWAIM DGEAVSWYYD SSSPDGTGAS SSVASKNIVS  60
ERNRRKKLND RLLALRAVVP NITKMDKASI IKDAIEYIQH LHEQEKRIQA EILDLESRNK  120
FKNPTYEFDQ DLPILLRSKK KKTEHLFDSL SSRNSPSIEI IELRVTYMRE KTFVVNLTCS  180
KRTDTMVKLC EVFESLKLKV IAANITSFSG TLLKKTAFIE ADEKEEDFLK IKIQTAISAL  240
NDPQSPMSI
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN22657.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0932130.0BT093213.1 Soybean clone JCVI-FLGm-17A23 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028195644.10.0transcription factor bHLH35-like isoform X1
SwissprotQ2HIV94e-80BH035_ARATH; Transcription factor bHLH35
TrEMBLA0A0B2QSK80.0A0A0B2QSK8_GLYSO; Transcription factor bHLH35
STRINGGLYMA13G00480.21e-161(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33893369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.18e-61bHLH family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]