PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN22773.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family B3
Protein Properties Length: 122aa    MW: 13978.9 Da    PI: 10.0315
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN22773.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B333.67.2e-1129112489
                 E-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
          B3   4 vltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                 +l +++  + ++l+lp  fa+   + +  + +tl+l + +g ++   + i++k  +++  +++Wk+F++  + k+gD++ F++ +++e
  KHN22773.1  29 QL-TKYKASGSQLSLPPGFAKFLwE-S--KFQTLSLINAEGlEEICHQRIHTKETKSIKTGRCWKKFCSKSRFKQGDTIKFEFGDKNE 112
                 44.778888899********76643.3..4569*****999877777777899999**************************754333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.41E-821111IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.4E-922112IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508638.71325121IPR003340B3 DNA binding domain
PfamPF023624.9E-830113IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 122 aa     Download sequence    Send to blast
MHEASGNQLV DNNHNNTYGG PQVRIFREQL TKYKASGSQL SLPPGFAKFL WESKFQTLSL  60
INAEGLEEIC HQRIHTKETK SIKTGRCWKK FCSKSRFKQG DTIKFEFGDK NENVAKVTKE  120
IV
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN22773.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0B2QSJ74e-86A0A0B2QSJ7_GLYSO; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2663022
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]