PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN22837.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family M-type_MADS
Protein Properties Length: 65aa    MW: 7563.79 Da    PI: 10.383
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN22837.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF95.22.9e-301261150
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                krienk+nr+vtf+kRrng+lKKA+E SvLCdaeva+iifs+ gklye+ 
  KHN22837.1 12 KRIENKINREVTFAKRRNGLLKKAYEFSVLCDAEVALIIFSNLGKLYEFN 61
                79***********************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006630.501464IPR002100Transcription factor, MADS-box
SMARTSM004321.2E-34463IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.89E-28564IPR002100Transcription factor, MADS-box
CDDcd002655.38E-34564No hitNo description
PRINTSPR004041.8E-30626IPR002100Transcription factor, MADS-box
PfamPF003191.7E-251360IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-302641IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-304162IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 65 aa     Download sequence    Send to blast
REFPGRGIIE LKRIENKINR EVTFAKRRNG LLKKAYEFSV LCDAEVALII FSNLGKLYEF  60
NSTSR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1egw_A3e-18564160MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1egw_B3e-18564160MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1egw_C3e-18564160MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1egw_D3e-18564160MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
3mu6_A2e-18564160Myocyte-specific enhancer factor 2A
3mu6_B2e-18564160Myocyte-specific enhancer factor 2A
3mu6_C2e-18564160Myocyte-specific enhancer factor 2A
3mu6_D2e-18564160Myocyte-specific enhancer factor 2A
5f28_A3e-18564261MEF2C
5f28_B3e-18564261MEF2C
5f28_C3e-18564261MEF2C
5f28_D3e-18564261MEF2C
6byy_A4e-18564261MEF2 CHIMERA
6byy_B4e-18564261MEF2 CHIMERA
6byy_C4e-18564261MEF2 CHIMERA
6byy_D4e-18564261MEF2 CHIMERA
6bz1_A4e-18564261MEF2 CHIMERA
6bz1_B4e-18564261MEF2 CHIMERA
6bz1_C4e-18564261MEF2 CHIMERA
6bz1_D4e-18564261MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Functions with SEPALLATA1/AGL2 and SEPALLATA3/AGL9 to ensure proper development of petals, stamens and carpels and to prevent the indeterminate growth of the flower meristem. Forms a heterodimer via the K-box domain with AG, that could be involved in genes regulation during floral meristem development.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN22837.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0932641e-75BT093264.1 Soybean clone JCVI-FLGm-14C7 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009622386.16e-31PREDICTED: MADS-box protein CMB1-like
SwissprotP293842e-29SEP2_ARATH; Developmental protein SEPALLATA 2
TrEMBLA0A0B2QT503e-38A0A0B2QT50_GLYSO; Developmental protein SEPALLATA 2 (Fragment)
STRINGGLYMA08G38386.14e-35(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11933360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03710.35e-32MIKC_MADS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]
  3. Maejima K, et al.
    Degradation of class E MADS-domain transcription factors in Arabidopsis by a phytoplasmal effector, phyllogen.
    Plant Signal Behav, 2015. 10(8): p. e1042635
    [PMID:26179462]
  4. Wang X, et al.
    An exon skipping in a SEPALLATA-Like gene is associated with perturbed floral and fruits development in cucumber.
    J Integr Plant Biol, 2016. 58(9): p. 766-71
    [PMID:26936301]
  5. Li D, et al.
    FAR-RED ELONGATED HYPOCOTYL3 activates SEPALLATA2 but inhibits CLAVATA3 to regulate meristem determinacy and maintenance in Arabidopsis.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(33): p. 9375-80
    [PMID:27469166]