PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN22878.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB
Protein Properties Length: 233aa    MW: 26961.8 Da    PI: 5.6214
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN22878.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.51.1e-161461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g WT+eEd++lvd+++++G  +W++ ++  g+ R++k+c++rw++yl
       KHN22878.1 14 KGTWTAEEDKKLVDYITRYGHWNWRLLPKFAGLARCGKSCRLRWLNYL 61
                     799*****************99************************97 PP
2Myb_DNA-binding62.58.2e-2067111147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg+ T+eE+e +++++++lG++ W+tIa++m+ gRt++++k++w++ 
       KHN22878.1  67 RGNYTEEEEETIIKLHRRLGNR-WSTIAARMP-GRTDNEIKNHWHTN 111
                      899*******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.584961IPR017930Myb domain
SuperFamilySSF466891.76E-2911108IPR009057Homeodomain-like
SMARTSM007178.4E-111363IPR001005SANT/Myb domain
PfamPF002492.8E-141461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-221568IPR009057Homeodomain-like
CDDcd001675.86E-91661No hitNo description
PROSITE profilePS5129426.73162116IPR017930Myb domain
SMARTSM007171.4E-1766114IPR001005SANT/Myb domain
PfamPF002491.5E-1767111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.3E-2569115IPR009057Homeodomain-like
CDDcd001673.50E-780112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MVRTPSCDKN GLKKGTWTAE EDKKLVDYIT RYGHWNWRLL PKFAGLARCG KSCRLRWLNY  60
LRPNLKRGNY TEEEEETIIK LHRRLGNRWS TIAARMPGRT DNEIKNHWHT NLKKRSQQHN  120
SVATESQISN SNDQSPTEPT EDTAFQNFNS ATQDCSPLSQ HSSSSTSTEC TTVASTENLL  180
LLEDEFAFWD ADTDLVSGNF WLEPYMLDIS YLPASEPEYF SQVFDVELWS HDT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-29121155107B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that regulates freezing tolerance by affecting expression of CBF genes. {ECO:0000269|PubMed:24415840}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN22878.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA), jasmonic acid (JA), salt (NaCl), ethylene and auxin (IAA) (PubMed:16463103). Down-regulated by cold treatment (PubMed:24415840). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:24415840}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150393e-42AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003540869.21e-176transcription factor MYB13
RefseqXP_028194105.11e-176transcription factor MYB13-like
SwissprotQ9SJX81e-60MYB14_ARATH; Transcription factor MYB14
TrEMBLA0A445HND71e-174A0A445HND7_GLYSO; Transcription factor MYB14
TrEMBLK7LU241e-174K7LU24_SOYBN; Uncharacterized protein
STRINGGLYMA12G11330.21e-175(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35633186
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28110.12e-60myb domain protein 41
Publications ? help Back to Top
  1. Chen Y, et al.
    AtMYB14 Regulates Cold Tolerance in Arabidopsis.
    Plant Mol. Biol. Rep., 2013. 31: p. 87-97
    [PMID:24415840]