PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN23020.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family HD-ZIP
Protein Properties Length: 709aa    MW: 79708.6 Da    PI: 6.2128
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN23020.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox50.73e-162172556
                SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox  5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                 ++++ q+ +Le++ + +++p++++r++LA+++gL+++q+k+WFqN+R++ k
  KHN23020.1 21 KRLSSAQTARLERFIKDCPHPDEAQRRQLASEIGLETKQIKFWFQNKRTQIK 72
                67899*******************************************9988 PP
2START138.19.4e-442234452206
                 HHHHHHHHHHHHHHHC-TT-EEEE.....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEEC CS
       START   2 laeeaaqelvkkalaeepgWvkss.....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevis 86 
                 +a +a++el++++  +ep+W+kss      +++ + + ++f+++++      ++ea ++sg+v  ++ +l   +ld   +W + ++    kaet++vi+
  KHN23020.1 223 VAAAAMNELIRLIRINEPLWTKSStqdgkPILQHENYEKIFPRTNSfkganLRVEATKESGIVSINSIQLIDMFLDPD-KWVNLFPtivtKAETMKVIE 320
                 6889**********************999999999******99999999*******************9999999988.99999999999********* PP

                 TT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXX. CS
       START  87 sg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlp. 177
                 +g      galqlm+ ++ +lsplv  R+f f+Ry++q ++g+wvi+dvS ds ++++   s+  + ++pSg++i++ +ng s vtwvehv++++++  
  KHN23020.1 321 NGlvgsrsGALQLMFEQMHVLSPLVQpREFQFLRYCQQIEEGVWVIADVSFDSFRQKT---SFFHSWRHPSGCMIQEIPNGCSMVTWVEHVEVDDKIQt 416
                 ***********************9977*********************9999999987...79*********************************999 PP

                 HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
       START 178 hwllrslvksglaegaktwvatlqrqcek 206
                 h+l++ l+ +g+a ga +w   lqr ce+
  KHN23020.1 417 HQLYKDLIATGIAYGAERWIMELQRICER 445
                 ***************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.0E-17472IPR009057Homeodomain-like
SuperFamilySSF466891.04E-151178IPR009057Homeodomain-like
PROSITE profilePS5007115.4991474IPR001356Homeobox domain
CDDcd000866.98E-151675No hitNo description
SMARTSM003899.6E-161678IPR001356Homeobox domain
PfamPF000467.9E-142072IPR001356Homeobox domain
PROSITE patternPS0002704972IPR017970Homeobox, conserved site
PROSITE profilePS5084844.255213448IPR002913START domain
SuperFamilySSF559611.1E-31216446No hitNo description
CDDcd088758.30E-101217444No hitNo description
SMARTSM002344.9E-33222445IPR002913START domain
PfamPF018524.5E-36223445IPR002913START domain
Gene3DG3DSA:3.30.530.201.8E-10224410IPR023393START-like domain
SuperFamilySSF559612.33E-10501672No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 709 aa     Download sequence    Send to blast
MASPGGSGDE GSHQGRRPSY KRLSSAQTAR LERFIKDCPH PDEAQRRQLA SEIGLETKQI  60
KFWFQNKRTQ IKNQHERADN TALRVENDRI HTENLLMKEA LKNMLCSSCG GAPCQEEDHE  120
HAIQSMQLEN IQLKEEHEKV SSLLARYLEK QMSPPELQQQ AFNIPIIGSS SHAPELENSS  180
LNYEIGGSSS SHGPSRYGMQ IMVSDDHNLL RSEGIEKALM FKVAAAAMNE LIRLIRINEP  240
LWTKSSTQDG KPILQHENYE KIFPRTNSFK GANLRVEATK ESGIVSINSI QLIDMFLDPD  300
KWVNLFPTIV TKAETMKVIE NGLVGSRSGA LQLMFEQMHV LSPLVQPREF QFLRYCQQIE  360
EGVWVIADVS FDSFRQKTSF FHSWRHPSGC MIQEIPNGCS MVTWVEHVEV DDKIQTHQLY  420
KDLIATGIAY GAERWIMELQ RICERFACFY VERIPSQDSG GVINSLEGRR SVMNFSHRMI  480
KVFCESLTMS GNLDFPHMNM ENNSGLRVSI RKNRNHLGQP KGMIVVAATS IWLPLHYMKV  540
FEFFTDDRRR AQWDVLCFGN DANKVAHISN EIHPGNCISI YRPFIPNENN ALVLQESFTT  600
PMGSYVVYAP TDVAAMNSAI NGEDSSMLPV LPSGFVISAD GEPNAALGAF NSSDIERLGG  660
SLLTVAFQIL ASSPDGINMS NMESVEAVNS LLTSTILKVK DALNCNNLE
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN23020.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028248278.10.0homeobox-leucine zipper protein HDG11-like
TrEMBLA0A445IVZ50.0A0A445IVZ5_GLYSO; Homeobox-leucine zipper protein HDG11 isoform A
STRINGGLYMA09G03000.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF10263398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73360.10.0homeodomain GLABROUS 11
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]