PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN23056.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MIKC_MADS
Protein Properties Length: 244aa    MW: 28504.1 Da    PI: 9.3239
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN23056.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF91.63.9e-29959151
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                +rienk+nrqvtfskRr g+lKKA+ELSvLCdaev +iifss+gkl+ yss
  KHN23056.1  9 ERIENKINRQVTFSKRRSGLLKKAFELSVLCDAEVGLIIFSSRGKLFQYSS 59
                69***********************************************96 PP
2K-box68.22.7e-2376158385
       K-box   3 kssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkek 85 
                 ks++ +  e++++s ++e+ kL++++e+L+r+qRh++GedLe+Ls+k+Lq+Le+qL+  l   R+++++ l++  +el++k  
  KHN23056.1  76 KSHTGDSLEHDSQSAYHEFLKLRAKYESLERTQRHFQGEDLEPLSFKDLQSLEKQLDITLALTRQHQTKKLMARADELREKVS 158
                 555556778889*******************************************************************9976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.202161IPR002100Transcription factor, MADS-box
SMARTSM004327.6E-38160IPR002100Transcription factor, MADS-box
CDDcd002654.20E-39275No hitNo description
SuperFamilySSF554555.1E-31276IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004049.6E-30323IPR002100Transcription factor, MADS-box
PfamPF003193.9E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004049.6E-302338IPR002100Transcription factor, MADS-box
PRINTSPR004049.6E-303859IPR002100Transcription factor, MADS-box
PfamPF014865.8E-1984159IPR002487Transcription factor, K-box
PROSITE profilePS5129712.00287206IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MGRGRVVLER IENKINRQVT FSKRRSGLLK KAFELSVLCD AEVGLIIFSS RGKLFQYSST  60
DITKIIERYR QCRYSKSHTG DSLEHDSQSA YHEFLKLRAK YESLERTQRH FQGEDLEPLS  120
FKDLQSLEKQ LDITLALTRQ HQTKKLMARA DELREKVSCR GYKKPSLESK VFSLNNHEKD  180
EFSSLILDNN NYIQMHATQV DQFESETALN TCRFQHQEVV SKEKAIDTRT EHSQSSHNKN  240
NGWL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A5e-24178176MEF2 CHIMERA
6byy_B5e-24178176MEF2 CHIMERA
6byy_C5e-24178176MEF2 CHIMERA
6byy_D5e-24178176MEF2 CHIMERA
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN23056.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0936810.0BT093681.1 Soybean clone JCVI-FLGm-14A18 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006587365.11e-171truncated transcription factor CAULIFLOWER D isoform X1
RefseqXP_028179810.11e-171truncated transcription factor CAULIFLOWER D-like isoform X1
TrEMBLA0A0B2QNN11e-180A0A0B2QNN1_GLYSO; MADS-box transcription factor 6
STRINGGLYMA09G27461.11e-170(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF132231730
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45650.12e-57AGAMOUS-like 6
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]