PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN23067.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C3H
Protein Properties Length: 339aa    MW: 36894.7 Da    PI: 5.5822
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN23067.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.52e-072036926
                GGGTS--TTTTT-SS-SS CS
     zf-CCCH  9 fartGtCkyGdrCkFaHg 26
                +++ G C+yG+rCkF H+
  KHN23067.1 20 HQK-GSCSYGERCKFLHS 36
                455.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.104.1E-52035IPR000571Zinc finger, CCCH-type
PfamPF006428.1E-52036IPR000571Zinc finger, CCCH-type
PROSITE profilePS501039.1882138IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:2.130.10.109.4E-1836144IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003201.2E-64281IPR001680WD40 repeat
SuperFamilySSF509784.67E-5043330IPR017986WD40-repeat-containing domain
PfamPF004007.2E-54581IPR001680WD40 repeat
PROSITE profilePS5008214.6524990IPR001680WD40 repeat
PROSITE profilePS5029422.49149251IPR017986WD40-repeat-containing domain
PRINTSPR003201.1E-66882IPR020472G-protein beta WD-40 repeat
PROSITE patternPS0067806882IPR019775WD40 repeat, conserved site
SMARTSM003203.4121158IPR001680WD40 repeat
Gene3DG3DSA:2.130.10.106.2E-34145330IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003204.5E-4165202IPR001680WD40 repeat
PfamPF004000.0014169202IPR001680WD40 repeat
PROSITE profilePS5008213.082172211IPR001680WD40 repeat
PRINTSPR003201.1E-6189203IPR020472G-protein beta WD-40 repeat
PROSITE patternPS006780189203IPR019775WD40 repeat, conserved site
SMARTSM003201.6E-4205242IPR001680WD40 repeat
PfamPF004000.001207241IPR001680WD40 repeat
PRINTSPR003201.1E-6229243IPR020472G-protein beta WD-40 repeat
SMARTSM003201.3246289IPR001680WD40 repeat
SMARTSM003202.1292329IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0016740Molecular Functiontransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MDVDGGNKRV YNRLGGDAKH QKGSCSYGER CKFLHSWSVG DGFSLLTQLE GHQKAVSAIA  60
FPSGSDKLYT GSTDETARIW DCQSGKCVGV INLGGEVGCM ISEGPWVFVG IPNFVKAWNT  120
QNLSELSLNG PVGQVYALVV NNDMLFAGTQ DGSILAWKFN VATNCFEPAA SLKGHSRGVV  180
SLVVGANRLY SGSMDNTIKV WNLETLQCLQ TLTEHTSVVM SVLCWDQFLL SCSLDKTVKV  240
WYATESGNLE VTYSHNEENG ILTLCGMHDS QGKPILLCAC NDNTVHLYDL PSFAERGKIL  300
TKQEVRAIQI GPNGIFFTGD GTGEVRVWNW IAEATTTTQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6g6m_A5e-26373295323Tako8
6g6n_A5e-26373295323Tako8
6g6n_B5e-26373295323Tako8
6g6n_C5e-26373295323Tako8
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN23067.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150441e-57AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028181612.10.0zinc finger CCCH domain-containing protein 48-like
SwissprotQ9FNZ20.0C3H48_ARATH; Zinc finger CCCH domain-containing protein 48
TrEMBLA0A0B2QTT60.0A0A0B2QTT6_GLYSO; Zinc finger CCCH domain-containing protein 48
STRINGGLYMA09G27300.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF74463343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25440.11e-172zinc finger WD40 repeat protein 1
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]