PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN23143.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 157aa    MW: 17262.5 Da    PI: 10.3301
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN23143.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.90.00141840123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                ++C+ C+++F +   L  H  +H
  KHN23143.1 18 FECKTCNRRFASFQALGGHRASH 40
                89*********999998888887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.38E-91687No hitNo description
PfamPF139121.6E-121742IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.0971845IPR007087Zinc finger, C2H2
SMARTSM003550.251840IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002802040IPR007087Zinc finger, C2H2
PfamPF139125.2E-106489IPR007087Zinc finger, C2H2
PROSITE profilePS501579.1626592IPR007087Zinc finger, C2H2
SMARTSM003550.56587IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806787IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 157 aa     Download sequence    Send to blast
MLLSRTTTNL NTSNNRVFEC KTCNRRFASF QALGGHRASH KKPRLMGESD SQVLIHGSPP  60
KPKTHECSIC GLEFAIGQAL GGHMRRHRAA AASNGNMHTT INSWLSSSNS GGSTVDNTLP  120
PNMNNKANNT KRVLFPDLNL TPLENDLEFL KFGHCFN
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN23143.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0912330.0BT091233.1 Soybean clone JCVI-FLGm-7B5 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001236265.11e-114C2H2-type zinc finger domain-containing protein
TrEMBLC6T1C71e-112C6T1C7_SOYBN; Uncharacterized protein
STRINGGLYMA20G23180.11e-113(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31634175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37430.18e-29C2H2 family protein