PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN23183.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family M-type_MADS
Protein Properties Length: 247aa    MW: 27795 Da    PI: 10.551
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN23183.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF74.77.4e-241664149
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                k+ +n+sn qvtfskRrng++KKA+EL++LC+++va+++fs+ +k++ +
  KHN23183.1 16 KKMSNQSNLQVTFSKRRNGLFKKASELCTLCGTDVALVVFSPGQKVFSF 64
                5689*****************************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.5E-32867IPR002100Transcription factor, MADS-box
PROSITE profilePS5006624.656868IPR002100Transcription factor, MADS-box
CDDcd002651.32E-36977No hitNo description
SuperFamilySSF554553.92E-28982IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-191030IPR002100Transcription factor, MADS-box
PfamPF003191.7E-241864IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-193045IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-194566IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009960Biological Processendosperm development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MSGPKKSRGR QKIEMKKMSN QSNLQVTFSK RRNGLFKKAS ELCTLCGTDV ALVVFSPGQK  60
VFSFGHPNVD AVIDRYLARP PPTDSGTMQI IEAHRMAHVH DLNVQLTQIN NQLDHERKRT  120
NELNLMNKEA QAQMWWARPV DGMSMAQVKQ FKAALEEMKK QVARLVDRAM LQSVTNPTLQ  180
FFPGVSSSSN SNLVHQPHPL PAPQVFTPHL IQPPMLQNFM FHDGSMMRHH GFDNIGMGGY  240
GPTAGFF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6bz1_A1e-16991284MEF2 CHIMERA
6bz1_B1e-16991284MEF2 CHIMERA
6bz1_C1e-16991284MEF2 CHIMERA
6bz1_D1e-16991284MEF2 CHIMERA
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN23183.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028184965.10.0agamous-like MADS-box protein AGL62
TrEMBLA0A0B2QTQ80.0A0A0B2QTQ8_GLYSO; Agamous-like MADS-box protein AGL62
STRINGGLYMA10G40080.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12833331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.13e-62AGAMOUS-like 62
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]