PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN23234.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

LBD

Protein Properties

Length: 82aa MW: 8956.3 Da PI: 8.2195

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN23234.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	51.7	2.5e-16	2	63	1	57
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeereda 57 +C++C+vlr++C+++C+l+p++ +++q +++ +v+k+FG++ ++++++++pe++r+ + KHN23234.1 2 SCNGCRVLRKGCSESCILRPCLqwietAEAQGHATVFVAKFFGRAGLMSFISNVPENQRPGV 63 6*******************9999777889************************9866 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	12.611	1	82	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.3E-13	2	64	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 82 aa Download sequence Send to blast
MSCNGCRVLR KGCSESCILR PCLQWIETAE AQGHATVFVA KFFGRAGLMS FISNVPENQR 60 PGVVPGFESP ASFWRDTGTG FL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN23234.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015034	2e-65	AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003550015.1	2e-37	LOB domain-containing protein 38
Refseq	XP_028211670.1	2e-37	LOB domain-containing protein 38-like
Swissprot	Q9FN11	4e-35	LBD37_ARATH; LOB domain-containing protein 37
Swissprot	Q9SZE8	3e-35	LBD39_ARATH; LOB domain-containing protein 39
TrEMBL	A0A0B2QT33	6e-54	A0A0B2QT33_GLYSO; LOB domain-containing protein 39
STRING	GLYMA17G17540.1	8e-37	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF20233	4	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37540.1	1e-37	LOB domain-containing protein 39

Publications ? help Back to Top
Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933] Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465]