PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN23247.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GRAS
Protein Properties Length: 255aa    MW: 29725.3 Da    PI: 4.8915
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN23247.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS51.81.6e-16128198373
        GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn 73 
                 +lLle A+av++++ ++ ++lL+ l+el+sp+gd+ q+laayf++AL +r+++ ++++y++l++ ++++ +
  KHN23247.1 128 NLLLESARAVADNNSTRLHHLLWMLNELSSPYGDTEQKLAAYFLRALFSRVTEAGDRTYRSLASASEKTCS 198
                 79***********************************************************9776665433 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS509859.135100255IPR005202Transcription factor GRAS
PfamPF035145.4E-14128198IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MDTLFRLVSF HQQQQPQQQP DPSLNSTTSR TSSSSRSSRQ NYYPYSHQEE EECFNFYMDE  60
EDLSSSSSKH YYHPYQPHHH QQHNVSNIST NTFSTTPNTD YSYSYSFSPT QPVQDFNFEF  120
SSPNWSHNLL LESARAVADN NSTRLHHLLW MLNELSSPYG DTEQKLAAYF LRALFSRVTE  180
AGDRTYRSLA SASEKTCSFE STRKTVLKFQ EPRIVTVVEE EADLDVGIDG YEFVKGFEES  240
LRWFRVYFEA LDDVL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B3e-3410421168174Protein SHORT-ROOT
5b3h_B1e-3410421114120Protein SHORT-ROOT
5b3h_E1e-3410421114120Protein SHORT-ROOT
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN23247.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003550007.11e-129protein SHORT-ROOT
RefseqXP_028208793.11e-129protein SHORT-ROOT-like
TrEMBLA0A0B2QUE60.0A0A0B2QUE6_GLYSO; Protein SHORT-ROOT
STRINGGLYMA17G17400.11e-128(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37650.16e-36GRAS family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]