PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN23276.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

Trihelix

Protein Properties

Length: 884aa MW: 97299.5 Da PI: 8.2104

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN23276.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	58.4	1.8e-18	794	873	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W+ +ev++Li +r+e+ er++ k +++lWee+s+k+ + g+ rsp qCk+ w +l +y+ ik+ ++k+ ++py +++e KHN23276.1 794 KWKTEEVKKLIGMREELSERFQVVKGRMALWEEISQKLLADGICRSPGQCKSLWTSLVVKYEGIKNEDRKK------SWPYIEDME 873 7****************************************************************9984......6****98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.60.15.10	8.6E-68	77	327	IPR001279	Metallo-beta-lactamase
SuperFamily	SSF56281	5.99E-73	78	492	IPR001279	Metallo-beta-lactamase
SMART	SM00849	2.3E-25	90	287	IPR001279	Metallo-beta-lactamase
Pfam	PF00753	3.0E-10	91	235	IPR001279	Metallo-beta-lactamase
Pfam	PF07521	1.1E-6	433	464	IPR011108	Zn-dependent metallo-hydrolase, RNA specificity domain
Gene3D	G3DSA:1.10.10.60	2.3E-4	787	851	IPR009057	Homeodomain-like
PROSITE profile	PS50090	8.327	787	851	IPR017877	Myb-like domain
Pfam	PF13837	7.6E-15	792	875	No hit	No description
CDD	cd12203	4.02E-19	793	858	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 884 aa Download sequence Send to blast
MSALTSLSLS LRTLSLRPKP TTLSASLSAI PGSSDGSKTK VPPRKRRTGR IEGPRKSMED 60 SVQRKMEQFY EGSDGPPLRI LPIGGLGEIG MNCMLVGNND RYILIDAGVM FPDYDELGVQ 120 KIIPDTTFIR KWSHKIEALI ITHGHEDHIG ALPWVIPALD SNTPIFASSF TMELIKKRLK 180 EHGIFVPSRL KVFRTRKKFV AGPFEIEPIR VTHSIPDCCG LVLRCSDGTI LHTGDWKIDE 240 TPLDGKVFDR EALEELSKEG VTLMMSDSTN VLSPGRTISE SVVADALLRH ISASKGRVIT 300 TQFASNLHRL GSVKAAADLT GRKLAFVGMS LRTYLDAAWK DGKAPIDPST LVKAEDIDAY 360 APKDLLIVTT GSQAEPRAAL NLASYGSSHA FKLAKEDVVL YSAKVIPGNE SRVMKMLNRI 420 SEIGSTIVMG KNEGLHTSGH AYRGELEEIL RIVKPQHFLP IHGELLFLKE HELLGKSTGI 480 RHTAVIKNGE MLGVSHLRNR RVLSNGFISL GKENLQLKYS DGDRAFGTSS DLFIDERLRI 540 ALDGIIVISM EIFRPKILDG SAENTLKGKI RITTRCLWLD KGKLMDALYK AARAALSSCP 600 VKSPLAHIER IVSEVLRKMV RKYSGKRPEV IAIAIEKPAA ILADEINTKL SGKSHVGLGM 660 STLSKAVDGH GKGNQSTGLQ VKDDSIDNAS GAEGDLSEED NTASGPEGYL SEEDNTASGA 720 EGDLSESEDS DEFWKPFITS LPVEKSISAD NGYVSPKEQK SNLKKDDSED IDEAKSEETS 780 NSEAKSSKSV KRNKWKTEEV KKLIGMREEL SERFQVVKGR MALWEEISQK LLADGICRSP 840 GQCKSLWTSL VVKYEGIKNE DRKKSWPYIE DMERIMSDKE APAK

Sequence ? help Back to Top

Protein Sequence Length: 884 aa Download sequence Send to blast

MSALTSLSLS LRTLSLRPKP TTLSASLSAI PGSSDGSKTK VPPRKRRTGR IEGPRKSMED  60
SVQRKMEQFY EGSDGPPLRI LPIGGLGEIG MNCMLVGNND RYILIDAGVM FPDYDELGVQ  120
KIIPDTTFIR KWSHKIEALI ITHGHEDHIG ALPWVIPALD SNTPIFASSF TMELIKKRLK  180
EHGIFVPSRL KVFRTRKKFV AGPFEIEPIR VTHSIPDCCG LVLRCSDGTI LHTGDWKIDE  240
TPLDGKVFDR EALEELSKEG VTLMMSDSTN VLSPGRTISE SVVADALLRH ISASKGRVIT  300
TQFASNLHRL GSVKAAADLT GRKLAFVGMS LRTYLDAAWK DGKAPIDPST LVKAEDIDAY  360
APKDLLIVTT GSQAEPRAAL NLASYGSSHA FKLAKEDVVL YSAKVIPGNE SRVMKMLNRI  420
SEIGSTIVMG KNEGLHTSGH AYRGELEEIL RIVKPQHFLP IHGELLFLKE HELLGKSTGI  480
RHTAVIKNGE MLGVSHLRNR RVLSNGFISL GKENLQLKYS DGDRAFGTSS DLFIDERLRI  540
ALDGIIVISM EIFRPKILDG SAENTLKGKI RITTRCLWLD KGKLMDALYK AARAALSSCP  600
VKSPLAHIER IVSEVLRKMV RKYSGKRPEV IAIAIEKPAA ILADEINTKL SGKSHVGLGM  660
STLSKAVDGH GKGNQSTGLQ VKDDSIDNAS GAEGDLSEED NTASGPEGYL SEEDNTASGA  720
EGDLSESEDS DEFWKPFITS LPVEKSISAD NGYVSPKEQK SNLKKDDSED IDEAKSEETS  780
NSEAKSSKSV KRNKWKTEEV KKLIGMREEL SERFQVVKGR MALWEEISQK LLADGICRSP  840
GQCKSLWTSL VVKYEGIKNE DRKKSWPYIE DMERIMSDKE APAK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5a0t_A	2e-87	78	636	19	560	RIBONUCLEASE J
5a0t_B	2e-87	78	636	19	560	RIBONUCLEASE J
5a0v_A	2e-87	78	636	19	560	RIBONUCLEASE J
5a0v_B	2e-87	78	636	19	560	RIBONUCLEASE J
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Functional Description ? help Back to Top
Source	Description
UniProt	Essential protein required during embryogenesis, especially in initiating and maintaining the organization of shoot apical meristems (SAMs), cotyledons, and hypocotyls (PubMed:15266054, PubMed:25871650). Involved in auxin-mediated pathways during embryogenesis (PubMed:25871650). RNase that has both endonuclease and 5'-3' exonuclease activities. Involved in RNA surveillance to prevent overaccumulation of antisense RNA (PubMed:22033332). Probably involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay (By similarity). {ECO:0000250\|UniProtKB:Q72JJ7, ECO:0000269\|PubMed:15266054, ECO:0000269\|PubMed:22033332, ECO:0000269\|PubMed:25871650}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN23276.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By light. {ECO:0000269\|PubMed:25871650}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015035	1e-152	AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028236905.1	0.0	ribonuclease J-like
Swissprot	Q84W56	0.0	RNJ_ARATH; Ribonuclease J
TrEMBL	A0A0B2QP92	0.0	A0A0B2QP92_GLYSO; Ribonuclease J
STRING	GLYMA06G17980.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5099	34	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63420.1	0.0	Trihelix family protein

Publications ? help Back to Top
Bryant N,Lloyd J,Sweeney C,Myouga F,Meinke D Identification of nuclear genes encoding chloroplast-localized proteins required for embryo development in Arabidopsis. Plant Physiol., 2011. 155(4): p. 1678-89 [PMID:21139083] Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933] Halpert M,Liveanu V,Glaser F,Schuster G The Arabidopsis chloroplast RNase J displays both exo- and robust endonucleolytic activities. Plant Mol. Biol., 2019. 99(1-2): p. 17-29 [PMID:30511330]