PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN23504.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GeBP
Protein Properties Length: 139aa    MW: 16353.4 Da    PI: 10.0582
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN23504.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573103.41.9e-321881097
      DUF573 10 eDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97
                eDei lLqG++d++ ++g+s ++d++ fy+++k++++++++k+qlveKirrLKkK+++  +k+ s+ke+sf+++hdq +fe+s+kiW 
  KHN23504.1  1 EDEIKLLQGFLDYTLQRGSSHHNDTTLFYDQIKSKLQLNFNKNQLVEKIRRLKKKYRNVLNKICSDKEFSFKSTHDQATFEISRKIWS 88
                7**************************************************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045042.8E-29188IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 139 aa     Download sequence    Send to blast
EDEIKLLQGF LDYTLQRGSS HHNDTTLFYD QIKSKLQLNF NKNQLVEKIR RLKKKYRNVL  60
NKICSDKEFS FKSTHDQATF EISRKIWSNV TPVVDNSLDD DEINPNRSPN PNLNFSPVIL  120
KNETIFKNST EKKTPKHSR
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN23504.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2353300.0AC235330.1 Glycine max strain Williams 82 clone GM_WBb0082G12, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006584304.15e-96probable transcription factor At3g04930
RefseqXP_028242180.15e-96probable transcription factor At3g04930
SwissprotQ9CAV74e-38STKLJ_ARATH; Probable transcription factor At3g04930
TrEMBLA0A0B2QTU45e-96A0A0B2QTU4_GLYSO; Uncharacterized protein (Fragment)
STRINGGLYMA03G40520.15e-87(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF32553365
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04930.28e-41DNA-binding storekeeper protein-related transcriptional regulator
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]