PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN23589.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB_related
Protein Properties Length: 466aa    MW: 51784.9 Da    PI: 5.5919
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN23589.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.36.3e-174690147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     r +WT+eE++++++a k++G g W+ I +++g ++t+ q++s+ qk+
       KHN23589.1 46 REKWTEEEHQKFLEALKLYGRG-WRQIEEHIG-TKTAVQIRSHAQKF 90
                     789*******************.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.81E-164094IPR009057Homeodomain-like
PROSITE profilePS5129421.2014195IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.0E-104399IPR009057Homeodomain-like
TIGRFAMsTIGR015573.7E-164493IPR006447Myb domain, plants
SMARTSM007174.5E-134593IPR001005SANT/Myb domain
PfamPF002491.2E-144689IPR001005SANT/Myb domain
CDDcd001672.57E-114891No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 466 aa     Download sequence    Send to blast
MEMQDQIEST RSTIFGSASN IHSNAEKQAE NVAPKVRKPY TITKQREKWT EEEHQKFLEA  60
LKLYGRGWRQ IEEHIGTKTA VQIRSHAQKF FSKVVRESEV SDEGSIQPIN IPPPRPKRKP  120
LHPYPRKSVN SFRGPTIPNE TEISPSTNLL VAEKDTPSPT SVLSTVGSEA FGSQFSEQTN  180
RCLSPNSCTT DIHSVSLSPV EKENDCMTSK ESEEEEKASP ASRPLSTVSN PKMCMKPEFS  240
SKEIEDATDM PQTTSIKLFG RTVSMVGNQK SLKIDDDGKP ITVKSDEVDD VENEKLGQSG  300
ESKQVDTQLS LGVVSGNWPI TPDADGANVT SIEPPKENLC FSESAPDAFF PQWSLSQGLP  360
PFYLRPCNQV LNPLPLRPSS LKVRTREEES CCTGSNTESV CDMENQGKNS DAVDSKFQKY  420
HEEGAAPQKK PARGFVPYKR CLAERDGHSF IVAMEEREGQ RARVCS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00146DAPTransfer from AT1G18330Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN23589.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003534089.10.0protein REVEILLE 7-like
RefseqXP_028181748.10.0protein REVEILLE 7-like
TrEMBLA0A0B2QU280.0A0A0B2QU28_GLYSO; Protein LHY
TrEMBLI1L3Y30.0I1L3Y3_SOYBN; Uncharacterized protein
STRINGGLYMA09G29800.30.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF73133244
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18330.14e-53MYB_related family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]