PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN23628.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GeBP
Protein Properties Length: 122aa    MW: 15008.8 Da    PI: 10.4549
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN23628.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573100.51.4e-3124115293
      DUF573   2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelsk 93 
                 lfqrlw+++D   lLqG++d+++++g+s  +++  fy+++k +++++++k+qlveKirrLKkK+++  +k+ s+ke+sf+++hdq +fe+s+
  KHN23628.1  24 LFQRLWTDDDVTELLQGFLDYTSQRGSSHDNNTALFYDQIKLRLQLDFNKNQLVEKIRRLKKKYRNVLNKICSDKEFSFKSAHDQATFEISH 115
                 79************************88888**********************************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045042.2E-2725115IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 122 aa     Download sequence    Send to blast
MQVEHHDSRR KSRRRRRWDD SRRLFQRLWT DDDVTELLQG FLDYTSQRGS SHDNNTALFY  60
DQIKLRLQLD FNKNQLVEKI RRLKKKYRNV LNKICSDKEF SFKSAHDQAT FEISHNSKHY  120
NY
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN23628.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2353301e-111AC235330.1 Glycine max strain Williams 82 clone GM_WBb0082G12, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003521741.18e-56probable transcription factor At5g28040
RefseqXP_028226669.17e-56probable transcription factor At5g28040
SwissprotQ9CAV73e-41STKLJ_ARATH; Probable transcription factor At3g04930
TrEMBLA0A0B2QV262e-83A0A0B2QV26_GLYSO; Uncharacterized protein
STRINGGLYMA03G40520.13e-55(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF32553365
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04930.21e-40DNA-binding storekeeper protein-related transcriptional regulator
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]