PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN23869.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C3H
Protein Properties Length: 680aa    MW: 74624.3 Da    PI: 7.0435
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN23869.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.64.4e-08274294526
                 --SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                 +C+ f++ GtC+ Gd+C +aHg
  KHN23869.1 274 PCPEFRK-GTCQKGDSCEYAHG 294
                 8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484032.32E-1428158IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.203.4E-1535163IPR020683Ankyrin repeat-containing domain
PfamPF127961.5E-677145IPR020683Ankyrin repeat-containing domain
SMARTSM002481077109IPR002110Ankyrin repeat
PROSITE profilePS5029717.13177159IPR020683Ankyrin repeat-containing domain
CDDcd002041.25E-1079154No hitNo description
SMARTSM002480.0039114146IPR002110Ankyrin repeat
PROSITE profilePS5008811.194114149IPR002110Ankyrin repeat
SMARTSM003562.1E-5269295IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.666269296IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.6E-5274295IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-5274294IPR000571Zinc finger, CCCH-type
SMARTSM0035637304327IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.869304328IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0010200Biological Processresponse to chitin
GO:0050832Biological Processdefense response to fungus
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 680 aa     Download sequence    Send to blast
MCSDSKSKLS SPTLVVMENS NIQKQNLDGL YNSVLLELSA SDDYEAFKRE VEEKGLDVNE  60
AGFWYGRRIG SKKMGSETRT PLMIASLFGS AKVLNYILLQ KGGGVDVNRV CGSDRATALH  120
CAVAGGSESS LEIVKLLLDA GADAECLDAS GNKPVNLIAP AFDSLSKSRR KALEMFLRGG  180
GERDELMSQE MELQMFSVPE KKEGSDNKKE YPVDISLPDI NNGVYGTDEF RMYNFKVKPC  240
SRAYSHDWTE CPFVHPGENA RRRDPRKYPY SCVPCPEFRK GTCQKGDSCE YAHGVFESWL  300
HPAQYRTRLC KDETGCARKV CFFAHKPEEL RPVYASTGSA MPSPKSYSAS GLDMTAMSPL  360
ALSSTSLPMP TVSTPPMSPL AVASSPKSGS MWQNKINLTP PSLQLPGSRL KAALSARDLE  420
MEMELLGLES PARQQQQQQQ QLIEEIARIS SPSFRSKEFN RIVDLNPTNL DDLLASADPS  480
VFSQLHGLSV QPSTPTQSGL QMRQNMNHLR ASYPSNIPSS PVRKPSAFGF DSSAAVATAV  540
MNSRSAAFAK RSQSFIDRGA ATHHLGLSSA SNSSCRVSST LSDWSSPTGK LDWGVNGDKL  600
NKLRKSTSFG FRNSGVTASP IAQPEFGAEP DVSWVHSLVK DVPSERSEIF GAEKQQYDLS  660
KEMLPPWMEQ LYIEQEQMVA
Functional Description ? help Back to Top
Source Description
UniProtInvolved in salt stress response. May positively modulate plant tolerance to salt stress. {ECO:0000269|PubMed:17609218}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN23869.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt stress. {ECO:0000269|PubMed:17609218}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0311570.0KT031157.1 Glycine max clone HN_CCL_209 C3H-type 1 Zn transcription factor (Glyma14g01990.2) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028201177.10.0zinc finger CCCH domain-containing protein 29-like
SwissprotQ9XEE60.0C3H29_ARATH; Zinc finger CCCH domain-containing protein 29
TrEMBLA0A0B2QUZ10.0A0A0B2QUZ1_GLYSO; Zinc finger CCCH domain-containing protein 29
STRINGGLYMA14G01990.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17963490
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40140.20.0C3H family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]