PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN24149.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family M-type_MADS
Protein Properties Length: 242aa    MW: 27580.8 Da    PI: 10.4086
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN24149.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF55.57e-181050242
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                +i n+s r+ tf kR++g++KK +ELS+LC+++++ i++ss
  KHN24149.1 10 FIANDSARKATFKKRKKGLMKKVSELSTLCGIDACAIVYSS 50
                899************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006617.058150IPR002100Transcription factor, MADS-box
SMARTSM004325.9E-25160IPR002100Transcription factor, MADS-box
CDDcd002665.07E-23285No hitNo description
SuperFamilySSF554552.49E-25295IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-9323IPR002100Transcription factor, MADS-box
PfamPF003192.1E-181050IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-92338IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-93859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MTRKKVKLAF IANDSARKAT FKKRKKGLMK KVSELSTLCG IDACAIVYSS YDPQPEVWPS  60
PMGVQRVLSK FRRMPELEQS KKMVNQESFL RQRIMKAKDQ LKKQRKDNRE KEMTQLMFQY  120
LSAGKIMHNI SMVDLNDLAW LIDQNLKDIN RRIEVLTKNV QSQPQIAAPV VTDVVAKVED  180
NGQGSQHGQQ GFDINVDLMQ KQNWFMNLMN NGSGGGGAGN EAMPFVGDVN QQNGFWPNPF  240
FH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKVKLAFIANDSARKATFKKRK
22125KKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269|PubMed:16798889, ECO:0000305|PubMed:26462908}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN24149.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028197480.10.0agamous-like MADS-box protein AGL80
SwissprotQ9FJK31e-65AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBLA0A0B2QVS11e-180A0A0B2QVS1_GLYSO; Agamous-like MADS-box protein AGL80
STRINGGLYMA11G33460.11e-179(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45233154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.16e-68AGAMOUS-like 80
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]
  2. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]