PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN24197.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family M-type_MADS
Protein Properties Length: 159aa    MW: 18304.3 Da    PI: 9.7572
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN24197.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF41.22.1e-131150342
                --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
      SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                i + + r+ t+ kR++gi+KK +EL +LC++ ++ ii s+
  KHN24197.1 11 ITDVTARKSTYKKRKKGIIKKVSELTILCGIPACAIISSP 50
                778899*******************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006615.643149IPR002100Transcription factor, MADS-box
SMARTSM004326.3E-20160IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.01E-21284IPR002100Transcription factor, MADS-box
PRINTSPR004045.7E-7323IPR002100Transcription factor, MADS-box
PfamPF003191.1E-131155IPR002100Transcription factor, MADS-box
PRINTSPR004045.7E-72338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    Send to blast
MTRKKVKLAY ITDVTARKST YKKRKKGIIK KVSELTILCG IPACAIISSP FDSKPEVWPD  60
PERAKQVIQK YLDASVLDES KNVNQESFIM QRIAKAQEQL KKHRQENHEK EMALSMFQYM  120
QGEDLPNNVE ELKELNKLIE KNLKEIENKL AVNGESISV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKVKLAYITDVTARKSTYKKRK
22125KKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN24197.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003535311.11e-113agamous-like MADS-box protein AGL80
RefseqXP_028183111.11e-113agamous-like MADS-box protein AGL80
TrEMBLA0A0B2QX421e-112A0A0B2QX42_GLYSO; MADS-box transcription factor PHERES 2
TrEMBLA0A445IMA61e-110A0A445IMA6_GLYSO; MADS-box transcription factor PHERES 2
TrEMBLI1LAZ01e-112I1LAZ0_SOYBN; Uncharacterized protein
STRINGGLYMA10G28320.11e-113(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13237929
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26630.15e-35M-type_MADS family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]