PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN24286.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C3H
Protein Properties Length: 229aa    MW: 25588.5 Da    PI: 7.6409
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN24286.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.16.3e-08221626
                -SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH  6 CrffartGtCkyGdrCkFaHg 26
                C+ f+r G+C +Gd C F+Hg
  KHN24286.1  2 CPEFRR-GQCDRGDACEFSHG 21
                ******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.812123IPR000571Zinc finger, CCCH-type
SMARTSM003560.041122IPR000571Zinc finger, CCCH-type
PfamPF006424.3E-6221IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.233155IPR000571Zinc finger, CCCH-type
SMARTSM003567.83154IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
VCPEFRRGQC DRGDACEFSH GVFECWLHPS RYRTEACKDG RNCKRKVCFF AHTPRQLRVL  60
HSNENSNKKK CTNMSPHNNN NNNTNNCCLV CHCSSSTRSP TSTLFGMSHF SPPLSPPSPS  120
SPSRFETNHH HGVVKYNKDV LSELMCSMEG LNFGEASLLS AASKPHNNFS SWLDVSEDHN  180
QKQFSTLSPT ITACGSFSNN GNGRFLREES GVVDDVISPD LAWVNELLM
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription repressor that functions as negative regulator of phytochrome-mediated promotion of seed germination. Inhibits seed germination by regulating the expression of gibberellic acid (GA) and abscisic acid (ABA) metabolic genes. Does not regulate the expression of the DELLA genes RGA and RGA1. Activated by PIL5, a phytochrome-interacting basic helix-loop-helix transcription factor. {ECO:0000269|PubMed:18487351}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN24286.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0311540.0KT031154.1 Glycine max clone HN_CCL_145 C3H-type 1 Zn transcription factor (Glyma12g13300.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028193713.11e-140zinc finger CCCH domain-containing protein 2-like
SwissprotQ9ZWA12e-34C3H2_ARATH; Zinc finger CCCH domain-containing protein 2
TrEMBLA0A0B2QRN21e-168A0A0B2QRN2_GLYSO; Zinc finger CCCH domain-containing protein 2 (Fragment)
STRINGGLYMA12G13300.11e-138(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62612644
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03790.11e-36C3H family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]
  3. Chang G, et al.
    AFP2 as the novel regulator breaks high-temperature-induced seeds secondary dormancy through ABI5 and SOM in Arabidopsis thaliana.
    Biochem. Biophys. Res. Commun., 2018. 501(1): p. 232-238
    [PMID:29723526]